Index  | Recent Threads  | Unanswered Threads  | Who's Active  | Guidelines  | Search
 

Quick Go ยป
No member browsing this thread
Thread Status: Active
Total posts in this thread: 325
Posts: 325   Pages: 33   [ Previous Page | 22 23 24 25 26 27 28 29 30 31 | Next Page ]
[ Jump to Last Post ]
Post new Thread
Author
Previous Thread This topic has been viewed 880603 times and has 324 replies Next Thread
supdood
Senior Cruncher
USA
Joined: Aug 6, 2015
Post Count: 333
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

@seippel
Thanks for giving us an official estimate.
----------------------------------------
Crunch with BOINC team USA
www.boincusa.com

[Sep 22, 2015 5:25:27 PM]   Link   Report threatening or abusive post: please login first  Go to top 
RetiredTech
Advanced Cruncher
Canada
Joined: Feb 2, 2012
Post Count: 91
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

Well, that was a good run for the Emerald but I'm not going to make it!
[Sep 22, 2015 7:31:38 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Papa3
Senior Cruncher
Joined: Apr 23, 2006
Post Count: 360
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

11,881 Vina batches were never submitted!

How many batches per day does the FA@H crunching crew typically pulverize?
------
According to

https://secure.worldcommunitygrid.org/stat/vi...amp;numRecordsPerPage=365

the high point looks like 5/28/15, when 796,402 results were returned (74 years, 171 days of computing time, earning 108,340 K points).
------
So now the question is: How many results does a single batch generate?

"one AutoDock "batch" involves docking up to 1,000 compounds, while one AD Vina batch involves docking up to 10,000 compounds"

http://fightaidsathome.scripps.edu/status
------
I therefore guesstimate 50 to 100 million results still to be returned, providing at least 60-90 days of crunching activity...
I believe my prior calculation of exactly 11,881 Vina batches was accurate, so I'll stick with that number (rather than "11,000").

Since these are Vina batches, and since Vina batches dock up to 10,000 compounds, the figure of 1,000 per batch seems low. Admittedly, the 10,000 is a maximum figure rather than an average, but in the absence of any evidence as to what the average is, 5,000 seems to be the most reasonable number to work with.

Accepting the estimate of 400,000 results per day, here's the math:

11,881 * 5,000 = 59,405,000 total results

59,405,000 results / 400,000 results per day = 148 days = 4.95 months

Crunching started on 7/24/15, and will apparently end around 9/26/15, for a total duration of 65 days, which means my original estimate of 60-90 days was right on target. Then I updated my estimate with the assumption of 5,000 compounds per Vina batch and 400,000 results per day, giving the new number of 4.95 months. The 400,000 figure proved to be too low - 514,158 were returned on 9/15/15 (that was the high point), and 475,000 would have been a better average number to use. Now we can solve for the last unknown, the actual number of compounds docked per batch:

11,881 x / 475,000 = 65 days; thus x = 2,600 compounds docked per batch (on the average)

Now that we know that 2,600 is the average number of Vina compounds docked per batch, this can be used to improve the accuracy of any future Estimated Completion Dates. cool

As for my personal situation, it looks like I will cross the 198-year mark by the time the WUs run out, leaving me 2 years short of the 200-year mark crying and hoping that additional WUs will be arriving soon! biggrin
----------------------------------------
[Edit 1 times, last edit by Papa3 at Sep 22, 2015 9:35:28 PM]
[Sep 22, 2015 9:21:44 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Papa3
Senior Cruncher
Joined: Apr 23, 2006
Post Count: 360
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

... The FAAH project will continue. We are now in the process of transitioning a significant part of the computational effort to analyzing the mountains of results that have been generated from the generosity and interest of the FAAH community. Virtual screening of new and promising AIDS/HIV targets will also continue, but we, with the participation of Prof. Ron Levy at Temple University, will also be using the computational power of FAAH to examine the existing results to determine the most likely candidates for further experimental evaluation. This is a critical step in the drug development pipeline, since buying or synthesizing "false positive" compounds can be expensive in both time and money. The BEDAM computational procedure developed in the Levy Laboratory applies higher-level (and more computationally intensive) physics-based computations to the FAAH results to evaluate and remove such false positives. In addition, we are developing new data mining procedures that will look at all of the results from FAAH virtual screens to construct new filters that will also increase our rate of true positives before we send our candidates to our collaborators for synthesis and testing. A more detailed description of these efforts will be posted soon in our next progress report. ...

Art Olson
This "next progress report", mentioned above on 7/16/15, has yet to arrive; the latest update to the FA@H project status page is dated December 9, 2014... and the last release of the FightAIDS@Home Newsletter (Volume 12) was dated November 18, 2013...

http://fightaidsathome.scripps.edu/status

http://fightaidsathome.scripps.edu/index.html
[Sep 22, 2015 10:15:42 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Wutzenjaeger
Cruncher
Joined: Sep 15, 2013
Post Count: 2
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

Is FAAH still running? If yes, how much work is left?
[Sep 23, 2015 9:08:40 PM]   Link   Report threatening or abusive post: please login first  Go to top 
supdood
Senior Cruncher
USA
Joined: Aug 6, 2015
Post Count: 333
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

With There are currently about 4.5-5.0 days of Vina work remaining until we run dry again (some resends will still be sent after this). After this round of work units completes, the project will move to an intermittent status and additional work may be available in the future from researchers as needed.

Seippel

See this post above.
----------------------------------------
Crunch with BOINC team USA
www.boincusa.com

[Sep 23, 2015 9:30:02 PM]   Link   Report threatening or abusive post: please login first  Go to top 
RetiredTech
Advanced Cruncher
Canada
Joined: Feb 2, 2012
Post Count: 91
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

So given that FAAH is running down, why don't some of you Senior Cruncher "100 year" and "Sapphire" people back down and let us little folk make some Gold and Emerald badges? wink OK, really, just do your stuff and move the project along! We'll catch-up later.
[Sep 24, 2015 12:07:36 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
Cruncher
Joined: May 22, 2018
Post Count: 0
Status: Offline
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

"EOP there won't be anyway as the BEDAM phase
is hot on the trail as successor.
... [Not expecting them to be
ported to a mobile version though]"

"... the project will move to an intermittent status
and additional work may be available in the future
from researchers as needed."

Uhm, so, this means:
- "additional work" includes the BEDAM phase, same badges?
- BEDAM work units will not be available for Android?
[Sep 24, 2015 4:32:15 AM]   Link   Report threatening or abusive post: please login first  Go to top 
KLiK
Master Cruncher
Croatia
Joined: Nov 13, 2006
Post Count: 3108
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

just adding FA@h on Android devices...no more OET for research!

lets finish up this project...
wink
----------------------------------------
oldies:UDgrid.org & PS3 Life@home


non-profit org. Play4Life in Zagreb, Croatia
[Sep 24, 2015 6:07:55 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
Cruncher
Joined: May 22, 2018
Post Count: 0
Status: Offline
Reply to this Post  Reply with Quote 
Re: FightAIDS@Home Estimated Completion Date ( June 4, 2015 ) ESTIMATE!!!

So given that FAAH is running down, why don't some of you Senior Cruncher "100 year" and "Sapphire" people back down and let us little folk make some Gold and Emerald badges? wink OK, really, just do your stuff and move the project along! We'll catch-up later.


According to the WCG staff, it wouldn't matter. The feeder is going to make sure the same allocation of units get sent out. So, when they said 4 to 5 days left of WU's, even if heavy crunchers left, it would still be 4 to 5 days.

Ever saw the message in the queue that there are no available work for the projects you have selected and then shortly thereafter you get new work? The feeder didn't have any work for you as it wasn't going to get more as it needed to get rid of work for other projects first to keep the allocation in check.

So it appears that no matter what you do, it doesn't matter.
[Sep 24, 2015 8:36:57 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Posts: 325   Pages: 33   [ Previous Page | 22 23 24 25 26 27 28 29 30 31 | Next Page ]
[ Jump to Last Post ]
Post new Thread