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Thread: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

Size is exactly same for the WU's 100K steps, very evenly computing, at least that's what I've observed on a dozen.

[Jul 30, 2015 6:49:55 PM]

petehardy
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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

I noticed that the first 2 results skipped about half of the checkpoints.

Result Log  

Result Name: BETA_ avx101118-005_ r3_ 1do_ 1-- 

 
 

 
 <core_client_version>7.4.42</core_client_version>
<![CDATA[
<stderr_txt>
[16:39:51] INFO:Turning trickle messaging on. 
[16:39:51] INFO:Turning intermediate uploads on. 
 %IMPACT-I: Requested file to open for appending md.out Does not exist. 
 Opening it as a new file. 
 %IMPACT-I: Softcore binding energy with umax = 1000.00000 
 %IMPACT-I: Using AGBNP2: Analytical Generalized Born Model + Analytic 
 Non-Polar Hydration Model 
 %IMPACT-I: Hybrid potential for binding with lambda = 0.00330 
agbnpf_assign_parameters(): info: attempting to load from SQL tables. 
[16:47:58] INFO: Checkpoint skipped. Progress 1000/100000 CPU time 425.734375 
[16:55:38] INFO: Checkpointed. Progress 2000 of 100000 steps complete CPU time 834.640625 
[17:03:11] INFO: Checkpoint skipped. Progress 3000/100000 CPU time 1241.140625 
[17:10:46] INFO: Checkpoint skipped. Progress 4000/100000 CPU time 1646.859375 
[17:18:18] INFO: Checkpointed. Progress 5000 of 100000 steps complete CPU time 2053.781250 
[17:26:06] INFO: Checkpoint skipped. Progress 6000/100000 CPU time 2460.234375 
[17:33:44] INFO: Checkpointed. Progress 7000 of 100000 steps complete CPU time 2867.703125 
[17:41:15] INFO: Checkpoint skipped. Progress 8000/100000 CPU time 3272.890625 
[17:49:21] INFO: Checkpointed. Progress 9000 of 100000 steps complete CPU time 3675.875000 
[17:57:10] INFO: Sending trickle message to server. 
[17:57:10] INFO: Starting intermediate upload, index = 1 
[17:57:10] INFO: Checkpoint skipped. Progress 10000/100000 CPU time 4082.671875 
[18:04:57] INFO: Checkpointed. Progress 11000 of 100000 steps complete CPU time 4492.140625 
[18:12:30] INFO: Checkpoint skipped. Progress 12000/100000 CPU time 4896.046875 
[18:20:22] INFO: Checkpointed. Progress 13000 of 100000 steps complete CPU time 5308.140625 
[18:28:40] INFO: Checkpoint skipped. Progress 14000/100000 CPU time 5739.437500 
[18:36:45] INFO: Checkpointed. Progress 15000 of 100000 steps complete CPU time 6166.187500 
[18:44:46] INFO: Checkpoint skipped. Progress 16000/100000 CPU time 6587.156250 
[18:52:46] INFO: Checkpointed. Progress 17000 of 100000 steps complete CPU time 7009.250000 
[19:00:27] INFO: Checkpoint skipped. Progress 18000/100000 CPU time 7427.453125 
[19:07:45] INFO: Checkpoint skipped. Progress 19000/100000 CPU time 7841.156250 
[19:15:16] INFO: Sending trickle message to server. 
[19:15:16] INFO: Starting intermediate upload, index = 2 
[19:15:16] INFO: Checkpointed. Progress 20000 of 100000 steps complete CPU time 8258.453125 
[19:22:56] INFO: Checkpoint skipped. Progress 21000/100000 CPU time 8680.015625 
[19:30:22] INFO: Checkpoint skipped. Progress 22000/100000 CPU time 9105.828125 
[19:38:06] INFO: Checkpointed. Progress 23000 of 100000 steps complete CPU time 9535.078125 
[19:45:48] INFO: Checkpoint skipped. Progress 24000/100000 CPU time 9954.265625 
[19:53:16] INFO: Checkpoint skipped. Progress 25000/100000 CPU time 10376.093750 
[20:01:16] INFO: Checkpointed. Progress 26000 of 100000 steps complete CPU time 10815.093750 
[20:09:14] INFO: Checkpoint skipped. Progress 27000/100000 CPU time 11254.578125 
[20:16:54] INFO: Checkpointed. Progress 28000 of 100000 steps complete CPU time 11692.750000 
[20:24:40] INFO: Checkpoint skipped. Progress 29000/100000 CPU time 12125.140625 
[20:32:47] INFO: Sending trickle message to server. 
[20:32:47] INFO: Starting intermediate upload, index = 3 
[20:32:47] INFO: Checkpointed. Progress 30000 of 100000 steps complete CPU time 12570.515625 
[20:40:43] INFO: Checkpoint skipped. Progress 31000/100000 CPU time 13014.859375 
[20:49:01] INFO: Checkpointed. Progress 32000 of 100000 steps complete CPU time 13470.312500 
[20:57:32] INFO: Checkpoint skipped. Progress 33000/100000 CPU time 13941.203125 
[21:05:39] INFO: Checkpointed. Progress 34000 of 100000 steps complete CPU time 14401.375000 
[21:13:36] INFO: Checkpoint skipped. Progress 35000/100000 CPU time 14843.812500 
[21:21:32] INFO: Checkpointed. Progress 36000 of 100000 steps complete CPU time 15283.578125 
[21:29:47] INFO: Checkpoint skipped. Progress 37000/100000 CPU time 15722.609375 
[21:37:56] INFO: Checkpointed. Progress 38000 of 100000 steps complete CPU time 16147.656250 
[21:46:10] INFO: Checkpoint skipped. Progress 39000/100000 CPU time 16576.984375 
[21:54:35] INFO: Sending trickle message to server. 
[21:54:35] INFO: Starting intermediate upload, index = 4 
[21:54:35] INFO: Checkpointed. Progress 40000 of 100000 steps complete CPU time 17013.968750 
[22:03:22] INFO: Checkpoint skipped. Progress 41000/100000 CPU time 17460.812500 
[22:12:25] INFO: Checkpointed. Progress 42000 of 100000 steps complete CPU time 17917.890625 
[22:21:03] INFO: Checkpoint skipped. Progress 43000/100000 CPU time 18378.109375 
[22:29:10] INFO: Checkpointed. Progress 44000 of 100000 steps complete CPU time 18830.125000 
[22:37:23] INFO: Checkpoint skipped. Progress 45000/100000 CPU time 19284.843750 
[22:45:47] INFO: Checkpointed. Progress 46000 of 100000 steps complete CPU time 19757.875000 
[22:54:18] INFO: Checkpoint skipped. Progress 47000/100000 CPU time 20226.156250 
[23:02:26] INFO: Checkpointed. Progress 48000 of 100000 steps complete CPU time 20681.046875 
[23:10:30] INFO: Checkpoint skipped. Progress 49000/100000 CPU time 21134.921875 
[23:18:20] INFO: Sending trickle message to server. 
[23:18:20] INFO: Starting intermediate upload, index = 5 
[23:18:20] INFO: Checkpointed. Progress 50000 of 100000 steps complete CPU time 21575.203125 
[23:26:13] INFO: Checkpoint skipped. Progress 51000/100000 CPU time 22012.656250 
[23:34:21] INFO: Checkpointed. Progress 52000 of 100000 steps complete CPU time 22454.640625 
[23:42:10] INFO: Checkpoint skipped. Progress 53000/100000 CPU time 22881.984375 
[23:49:40] INFO: Checkpoint skipped. Progress 54000/100000 CPU time 23299.375000 
[23:57:11] INFO: Checkpointed. Progress 55000 of 100000 steps complete CPU time 23722.140625 
[00:05:02] INFO: Checkpoint skipped. Progress 56000/100000 CPU time 24149.671875 
[00:12:34] INFO: Checkpointed. Progress 57000 of 100000 steps complete CPU time 24575.421875 
[00:20:13] INFO: Checkpoint skipped. Progress 58000/100000 CPU time 25011.921875 
[00:28:11] INFO: Checkpointed. Progress 59000 of 100000 steps complete CPU time 25450.218750 
[00:35:51] INFO: Sending trickle message to server. 
[00:35:51] INFO: Starting intermediate upload, index = 6 
[00:35:51] INFO: Checkpoint skipped. Progress 60000/100000 CPU time 25881.062500 
[00:43:51] INFO: Checkpointed. Progress 61000 of 100000 steps complete CPU time 26322.203125 
[00:52:12] INFO: Checkpoint skipped. Progress 62000/100000 CPU time 26778.609375 
[01:00:41] INFO: Checkpointed. Progress 63000 of 100000 steps complete CPU time 27251.421875 
[01:09:12] INFO: Checkpoint skipped. Progress 64000/100000 CPU time 27723.281250 
[01:17:41] INFO: Checkpointed. Progress 65000 of 100000 steps complete CPU time 28188.125000 
[01:26:25] INFO: Checkpoint skipped. Progress 66000/100000 CPU time 28664.218750 
[01:35:04] INFO: Checkpointed. Progress 67000 of 100000 steps complete CPU time 29141.718750 
[01:43:38] INFO: Checkpoint skipped. Progress 68000/100000 CPU time 29617.609375 
[01:52:11] INFO: Checkpointed. Progress 69000 of 100000 steps complete CPU time 30077.046875 
[02:00:47] INFO: Sending trickle message to server. 
[02:00:47] INFO: Starting intermediate upload, index = 7 
[02:00:47] INFO: Checkpoint skipped. Progress 70000/100000 CPU time 30546.078125 
[02:09:44] INFO: Checkpointed. Progress 71000 of 100000 steps complete CPU time 31020.625000 
[02:18:45] INFO: Checkpoint skipped. Progress 72000/100000 CPU time 31507.968750 
[02:27:59] INFO: Checkpointed. Progress 73000 of 100000 steps complete CPU time 31992.906250 
[02:37:32] INFO: Checkpoint skipped. Progress 74000/100000 CPU time 32480.312500 
[02:46:35] INFO: Checkpointed. Progress 75000 of 100000 steps complete CPU time 32965.046875 
[02:55:35] INFO: Checkpoint skipped. Progress 76000/100000 CPU time 33436.562500 
[03:04:29] INFO: Checkpointed. Progress 77000 of 100000 steps complete CPU time 33908.312500 
[03:13:43] INFO: Checkpoint skipped. Progress 78000/100000 CPU time 34371.921875 
[03:22:22] INFO: Checkpointed. Progress 79000 of 100000 steps complete CPU time 34834.953125 
[03:31:38] INFO: Sending trickle message to server. 
[03:31:38] INFO: Starting intermediate upload, index = 8 
[03:31:38] INFO: Checkpoint skipped. Progress 80000/100000 CPU time 35306.656250 
[03:40:28] INFO: Checkpointed. Progress 81000 of 100000 steps complete CPU time 35774.609375 
[03:49:20] INFO: Checkpoint skipped. Progress 82000/100000 CPU time 36242.562500 
[03:58:02] INFO: Checkpointed. Progress 83000 of 100000 steps complete CPU time 36708.578125 
[04:06:57] INFO: Checkpoint skipped. Progress 84000/100000 CPU time 37166.671875 
[04:15:32] INFO: Checkpointed. Progress 85000 of 100000 steps complete CPU time 37627.859375 
[04:23:38] INFO: Checkpoint skipped. Progress 86000/100000 CPU time 38073.765625 
[04:32:03] INFO: Checkpointed. Progress 87000 of 100000 steps complete CPU time 38534.328125 
[04:40:20] INFO: Checkpoint skipped. Progress 88000/100000 CPU time 38992.765625 
[04:48:37] INFO: Checkpointed. Progress 89000 of 100000 steps complete CPU time 39444.812500 
[04:56:45] INFO: Sending trickle message to server. 
[04:56:45] INFO: Starting intermediate upload, index = 9 
[04:56:45] INFO: Checkpoint skipped. Progress 90000/100000 CPU time 39893.468750 
[05:04:41] INFO: Checkpointed. Progress 91000 of 100000 steps complete CPU time 40338.187500 
[05:12:20] INFO: Checkpoint skipped. Progress 92000/100000 CPU time 40776.234375 
[05:20:13] INFO: Checkpointed. Progress 93000 of 100000 steps complete CPU time 41216.265625 
[05:28:25] INFO: Checkpoint skipped. Progress 94000/100000 CPU time 41674.437500 
[05:36:35] INFO: Checkpointed. Progress 95000 of 100000 steps complete CPU time 42127.296875 
[05:44:50] INFO: Checkpoint skipped. Progress 96000/100000 CPU time 42576.593750 
[05:53:28] INFO: Checkpointed. Progress 97000 of 100000 steps complete CPU time 43035.546875 
[06:02:51] INFO: Checkpoint skipped. Progress 98000/100000 CPU time 43494.312500 
[06:12:12] INFO: Checkpointed. Progress 99000 of 100000 steps complete CPU time 43942.859375 
[06:22:19] INFO: Checkpoint skipped. Progress 100000/100000 CPU time 44394.546875 
 %IMPACT-I: Species 1 written to SQL file md-out1.dms 
 %IMPACT-I: Species 2 written to SQL file md-out2.dms 
06:22:19 (3212): called boinc_finish(0) 

</stderr_txt>
]]>

The next result has done 73 checkpoints, has been running for 24 hours and will finish in 2 hours.

----------------------------------------

"Patience is a virtue", I can't wait to learn it!

[Jul 30, 2015 7:16:33 PM]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

I got 3 WUs. All are still running nicely without problems. Run times seem to be quite a bit longer than anticipated though. On my Opterons, one will take around 2 days, the other more than 4 days. The latter will probably not make the deadline. I will let it continue anyway.

I have no problem with long running WUs, as long as they are stable (which seems to be the case so far).

Memory use is between 190 and 340 MiB, which is also fine for me.

[Jul 30, 2015 7:18:02 PM]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

What's your Write to disk setting?

[Jul 30, 2015 7:19:23 PM]

petehardy
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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

What's your Write to disk setting?

900

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"Patience is a virtue", I can't wait to learn it!

[Jul 30, 2015 7:41:49 PM]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

Memory use may be platform dependent. The 6 that run on my W7-64 for now over 24 hours peaked so far at 101MB [Task Manager]

[Jul 30, 2015 8:05:18 PM]

uplinger
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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

Validation of the results may not happen until either tomorrow or next week. We are making sure it works as expected on development before we deploy it to beta test.

Also, from a stand point of this application running well, we have seen many successful results and very few errors which is great.

Thanks,
-Uplinger

[Jul 30, 2015 8:06:12 PM]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

What's your Write to disk setting?

900

Soooo, to snip an example of a skip, it took less than 900 second to get from 75000 to 76000, and the log confirms it then skips per your settings, the next checkpoint was longer away from 75000 to 77000, thus it checkpoints when asked if allowed to.

[02:46:35] INFO: Checkpointed. Progress 75000 of 100000 steps complete CPU time 32965.046875
[02:55:35] INFO: Checkpoint skipped. Progress 76000/100000 CPU time 33436.562500
[03:04:29] INFO: Checkpointed. Progress 77000 of 100000 steps complete CPU time 33908.312500

Think that's the answer.

[Jul 30, 2015 8:09:31 PM]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

I have one avx on my tablet, none on my desktop. The Wu should finish in 51 hours.

[Jul 30, 2015 9:16:42 PM]

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Re: New Beta Test for PC - July 29, 2015 [ Issues Thread ]

i got "some" WUs too
91 are done (duration 8.67h - 35.60h)
11 WUs are still running, 3Win/8Linux(VM), the Linux-WUs should be ready in ~ 20+ hours (55.5-71% now)

hl

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[Jul 31, 2015 8:13:58 AM]

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