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NixChix
Veteran Cruncher
United States
Joined: Apr 29, 2007
Post Count: 1187
Status: Offline
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I restarted 8 tasks
So far 1 valid (restarted twice!), 3 pval, 2 pver, 2 still running

Pvers (both restarted)
BETA_ MCM1_ 0000144_ 3561_ 0-- ran 8 hours, logged 6.62 It does not match the wingman. Lets see if it will become invalid.
BETA_ MCM1_ 0000144_ 8933_ 2-- ran 8.75 hours, logged 6.71. It does not match one wingman (the other errored) I think it will become invalid too.
BETA_ MCM1_ 0000144_ 3561_ 0-- Went invalid
BETA_ MCM1_ 0000144_ 8933_ 2-- Also went invalid
BETA_ MCM1_ 0000144_ 7332_ 0-- Pver status

2 more were successfully validated (3 total) even though they were both restarted. 2 others are Pval.
I've got 2 that got a 24 hour deadline and are now No Reply status. They still have 12 hrs and 18 hrs to go. d oh

I just restarted 8 more Beta 7.27 tasks. Lets see what happens. biggrin

Cheers coffee
----------------------------------------

[Dec 11, 2013 5:13:31 AM]   Link   Report threatening or abusive post: please login first  Go to top 
NixChix
Veteran Cruncher
United States
Joined: Apr 29, 2007
Post Count: 1187
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

Why hasn't my beta WUs started on 2 PCs? MCM WUs with a deadline of 12/15-16 are running, but the beta WUs with a deadline of 12/13 are not.
They don't automatically start on their own. If you have other jobs in your cache received earlier you must push them by suspending the others. Its the received date that sets the order, not the deadline, until the client goes into panic mode.

Cheers coffee
----------------------------------------

[Dec 11, 2013 5:19:10 AM]   Link   Report threatening or abusive post: please login first  Go to top 
CandymanWCG
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Romania
Joined: Dec 20, 2010
Post Count: 421
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

4 WUs I have suspended/resumed several times, all on a quad machine with LAIM ON. 3 of them have been deemed invalid while the wingman's got validated. A 4th is Pending Verification and I expect it to be marked invalid too. Here they are:
BETA_ MCM1_ 0000144_ 8316_ 0--
BETA_ MCM1_ 0000144_ 8888_ 0--
BETA_ MCM1_ 0000144_ 6693_ 0--

BETA_ MCM1_ 0000144_ 3134_ 1--

Oh, right, system information:
Win 7 x64 Ultimate
AMD Phenom B50 x4 @3.1GHz (stock)
RAMDisk 4.2.1.0 - 8GB partition
Boinc 7.2.33 x64
----------------------------------------
Knowledge is limited. Imagination encircles the world! - Albert Einstein



----------------------------------------
[Edit 1 times, last edit by CandymanWCG at Dec 11, 2013 5:50:07 AM]
[Dec 11, 2013 5:45:57 AM]   Link   Report threatening or abusive post: please login first  Go to top 
branjo
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Slovakia
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I have a task that has run for 24 plus hours and still has 2 plus hours left... and is past the 1 day dead line. Should I abort the task?

Name: BETA_MCM1_0000218_7522


Nope, let it finish.

Cheers peace
----------------------------------------

Crunching@Home since January 13 2000. Shrubbing@Home since January 5 2006

[Dec 11, 2013 6:04:32 AM]   Link   Report threatening or abusive post: please login first  Go to top 
gb009761
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Scotland
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

Well, I managed to snag another 4 Beta WU's, and again, I've stopped BOINC a couple of times, as well as using the "softer" version of trying to break them (unchecking LAIM, suspending them and ensuring that they've completely unloaded themselves from memory), so now, it's all a case of letting them complete and seeing as to how they fare with the validator...


Edit: Well, 2 of mine went Invalid - I'm still waiting for the other 2 to finish...


Workunit Status

Project Name: Beta - Mapping Cancer Markers
Created: 12/09/2013 19:05:37
Name: BETA_MCM1_0000144_4909
Minimum Quorum: 2
Replication: 4

Result Name App Version Number Status Sent Time Time Due /
Return Time CPU Time / Elapsed Time (hours) Claimed/ Granted BOINC Credit
BETA_ MCM1_ 0000144_ 4909_ 3-- 727 Valid 11/12/13 07:43:59 11/12/13 11:37:27 1.46 65.0 / 63.6
BETA_ MCM1_ 0000144_ 4909_ 2-- 727 Invalid 10/12/13 13:33:56 11/12/13 07:43:52 3.71 140.0 / 63.6 <--- mine
BETA_ MCM1_ 0000144_ 4909_ 0-- 727 Invalid 09/12/13 23:18:13 10/12/13 03:47:42 4.13 86.0 / 63.6
BETA_ MCM1_ 0000144_ 4909_ 1-- 727 Valid 09/12/13 23:18:12 10/12/13 08:25:46 3.39 62.1 / 63.6

Result Name: BETA_ MCM1_ 0000144_ 4909_ 2--

<core_client_version>6.10.58</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4909
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344909


[14:07:03] Initializing
wcg_learn_limit = 500000
[14:07:13] Running
[14:07:13] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[02:18:11] Initializing
wcg_learn_limit = 500000
[02:18:22] Running
[02:18:22] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[04:30:52] Initializing
wcg_learn_limit = 500000
[04:31:01] Running
[04:31:01] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[06:10:00] Initializing
wcg_learn_limit = 500000
[06:10:09] Running
[06:10:09] EvaluateFitnessOfStartingGeneSignatures 7738
[07:40:35] Writing final output
[07:40:35] Closing Output Stream
[07:40:35] Cleaning up
Result.out = 1627484.000000
Run complete, CPU time: 13353.732174
07:40:35 (52932): called boinc_finish

</stderr_txt>
]]>


Result Name: BETA_ MCM1_ 0000144_ 4909_ 1--

<core_client_version>7.0.28</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4909
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344909


[06:00:03] Initializing
wcg_learn_limit = 500000
[06:00:10] Running
[06:00:10] EvaluateFitnessOfStartingGeneSignatures 7738
[09:25:11] Writing final output
[09:25:11] Closing Output Stream
[09:25:11] Cleaning up
Result.out = 1627377.000000
Run complete, CPU time: 12192.835359
09:25:11 (4204): called boinc_finish

</stderr_txt>
]]>



Result Name: BETA_ MCM1_ 0000144_ 4909_ 0--

<core_client_version>7.2.31</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4909
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344909


[23:18:10] Initializing
wcg_learn_limit = 500000
[23:18:20] Running
[23:18:20] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[01:04:22] Initializing
wcg_learn_limit = 500000
[01:04:36] Running
[01:04:36] EvaluateFitnessOfStartingGeneSignatures 7738
[03:44:57] Writing final output
[03:44:57] Closing Output Stream
[03:44:57] Cleaning up
Result.out = 1627346.000000
Run complete, CPU time: 14874.804746
03:44:57 (4144): called boinc_finish

</stderr_txt>
]]>



Result Name: BETA_ MCM1_ 0000144_ 4909_ 3--

<core_client_version>7.0.64</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4909.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4909
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344909


[19:08:27] Initializing
wcg_learn_limit = 500000
[19:08:31] Running
[19:08:31] EvaluateFitnessOfStartingGeneSignatures 7738
[20:37:10] Writing final output
[20:37:10] Closing Output Stream
[20:37:10] Cleaning up
Result.out = 1627377.000000
Run complete, CPU time: 5248.419644
20:37:10 (6588): called boinc_finish

</stderr_txt>
]]>



Workunit Status

Project Name: Beta - Mapping Cancer Markers
Created: 12/09/2013 19:05:35
Name: BETA_MCM1_0000144_4859
Minimum Quorum: 2
Replication: 4

Result Name App Version Number Status Sent Time Time Due /
Return Time CPU Time / Elapsed Time (hours) Claimed/ Granted BOINC Credit
BETA_ MCM1_ 0000144_ 4859_ 3-- 727 Valid 11/12/13 07:22:25 11/12/13 13:15:55 1.51 51.9 / 68.8
BETA_ MCM1_ 0000144_ 4859_ 2-- 727 Invalid 10/12/13 13:33:56 11/12/13 07:22:21 3.70 141.3 / 68.8 <--- Mine
BETA_ MCM1_ 0000144_ 4859_ 0-- 727 Invalid 09/12/13 23:18:00 10/12/13 04:26:57 3.59 92.5 / 68.8
BETA_ MCM1_ 0000144_ 4859_ 1-- 727 Valid 09/12/13 23:17:58 10/12/13 03:17:31 3.62 85.6 / 68.8


Result Name: BETA_ MCM1_ 0000144_ 4859_ 2--

<core_client_version>6.10.58</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4859
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344859


[14:07:03] Initializing
wcg_learn_limit = 500000
[14:07:14] Running
[14:07:14] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[02:18:07] Initializing
wcg_learn_limit = 500000
[02:18:20] Running
[02:18:20] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[04:30:52] Initializing
wcg_learn_limit = 500000
[04:31:00] Running
[04:31:00] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[06:10:00] Initializing
wcg_learn_limit = 500000
[06:10:09] Running
[06:10:09] EvaluateFitnessOfStartingGeneSignatures 7738
[07:19:02] Writing final output
[07:19:03] Closing Output Stream
[07:19:03] Cleaning up
Result.out = 1627252.000000
Run complete, CPU time: 13320.616969
07:19:03 (52768): called boinc_finish

</stderr_txt>
]]>



Result Name: BETA_ MCM1_ 0000144_ 4859_ 1--

<core_client_version>7.0.64</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4859
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344859


[08:24:06] Initializing
wcg_learn_limit = 500000
[08:24:14] Running
[08:24:14] EvaluateFitnessOfStartingGeneSignatures 7738
[12:05:12] Writing final output
[12:05:12] Closing Output Stream
[12:05:12] Cleaning up
Result.out = 1627237.000000
Run complete, CPU time: 13026.613903
12:05:12 (233732): called boinc_finish

</stderr_txt>
]]>


Result Name: BETA_ MCM1_ 0000144_ 4859_ 0--

<core_client_version>6.10.58</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4859
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344859


[11:19:00] Initializing
wcg_learn_limit = 500000
[11:19:08] Running
[11:19:09] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[14:04:49] Initializing
wcg_learn_limit = 500000
[14:04:58] Running
[14:04:58] EvaluateFitnessOfStartingGeneSignatures 7738
[15:19:23] Writing final output
[15:19:23] Closing Output Stream
[15:19:23] Cleaning up
Result.out = 1627219.000000
Run complete, CPU time: 12938.379917
15:19:23 (6148): called boinc_finish

</stderr_txt>
]]>


Result Name: BETA_ MCM1_ 0000144_ 4859_ 3--

<core_client_version>7.0.64</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_4859.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_4859
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 344859


[05:34:49] Initializing
wcg_learn_limit = 500000
[05:34:52] Running
[05:34:52] EvaluateFitnessOfStartingGeneSignatures 7738
[07:05:29] Writing final output
[07:05:29] Closing Output Stream
[07:05:29] Cleaning up
Result.out = 1627237.000000
Run complete, CPU time: 5420.769548
07:05:29 (1268): called boinc_finish

</stderr_txt>
]]>


Edit 2: Well, my third WU validated a-ok tongue

Workunit Status

Project Name: Beta - Mapping Cancer Markers
Created: 12/09/2013 19:41:41
Name: BETA_MCM1_0000218_3221
Minimum Quorum: 2
Replication: 2

Result Name App Version Number Status Sent Time Time Due /
Return Time CPU Time / Elapsed Time (hours) Claimed/ Granted BOINC Credit
BETA_ MCM1_ 0000218_ 3221_ 1-- 727 Valid 10/12/13 14:26:06 12/12/13 04:16:59 14.85 562.7 / 440.4 <--- Mine
BETA_ MCM1_ 0000218_ 3221_ 0-- 727 Valid 10/12/13 14:26:05 11/12/13 09:28:49 11.10 318.1 / 440.4

The fourth (and final) WU is still crunching away... 72.8% done after 16:38 CPU hrs - an estimate of another 10 1/4 hrs still to go... Good job the deadline is set for the 14th.
----------------------------------------

----------------------------------------
[Edit 2 times, last edit by gb009761 at Dec 12, 2013 4:24:31 AM]
[Dec 11, 2013 6:12:47 AM]   Link   Report threatening or abusive post: please login first  Go to top 
cowtipperbs
Advanced Cruncher
Joined: Aug 24, 2009
Post Count: 78
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I have a task that has run for 24 plus hours and still has 2 plus hours left... and is past the 1 day dead line. Should I abort the task?

Name: BETA_MCM1_0000218_7522


Nope, let it finish.

Cheers peace



Thanks branjo
----------------------------------------

[Dec 11, 2013 6:38:38 AM]   Link   Report threatening or abusive post: please login first  Go to top 
branjo
Master Cruncher
Slovakia
Joined: Jun 29, 2012
Post Count: 1892
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

Finally went home and was able to check "suspend/resume" button with LAIM off:

- Win 7 SP1 64-b, i7-3770, 7.0.64: both 218 (long WU's) and 400 (short WU's) batches resumed on latest checkpoint after Suspend as well as after PC restart.
- Mac OS X Mavericks, i5-2500S, 7.0.65: also both 218 and 400 batches resumed fine after Suspend and after restart. Restart included the PRAM and VRAM reset (just to be thorough raised eyebrow ).

All the best peace

ETA1: so far I have gotten 55 WU's for 12 CPU threads:
- 12 In progress
- 0 Errors
- 14 PVal's
- 27 Valids
- 0 Invalids
- 2 PVer's

ETA2: I have received the first long units today early morning UTC with 1 day deadline: intention, or mistake by techs?

ETA3: checkpoints worked fine also after reinstall of BOINC on my Mac


ETA4: no Errors nor Invalids so far, 30 PVal, 0 PVer, 61 Valids, 2 still In progress (218's)

ETA5: you are very welcome cowtipperbs wink
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Crunching@Home since January 13 2000. Shrubbing@Home since January 5 2006

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[Edit 1 times, last edit by branjo at Dec 11, 2013 9:35:26 AM]
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cowtipperbs
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

two Invalids
Windows 7 x64
AMD 8350 OC 4.3
16 gig ram


Result Name: BETA_ MCM1_ 0000144_ 6352_ 0--

<core_client_version>7.2.28</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_6352.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_6352
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 346352


[16:20:35] Initializing
wcg_learn_limit = 500000
[16:20:40] Running
[16:20:41] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_6352.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[17:54:41] Initializing
wcg_learn_limit = 500000
[17:54:47] Running
[17:54:47] EvaluateFitnessOfStartingGeneSignatures 7738
[19:21:39] Writing final output
[19:21:39] Closing Output Stream
[19:21:39] Cleaning up
Result.out = 1627029.000000
Run complete, CPU time: 10285.068234
19:21:39 (11324): called boinc_finish

</stderr_txt>
]]>


Result Name: BETA_ MCM1_ 0000144_ 7354_ 1--

<core_client_version>7.2.28</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_7354.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000144_7354
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 16
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 7738
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 0
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 7738
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = NFCV
ModelType = SVM
FitnessFn = 0
MinFitness = -1
SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0"
SvmLearnLimit = 500000
RSeed = 347354


[15:32:56] Initializing
wcg_learn_limit = 500000
[15:33:02] Running
[15:33:02] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_7354.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[16:14:02] Initializing
wcg_learn_limit = 500000
[16:14:08] Running
[16:14:08] EvaluateFitnessOfStartingGeneSignatures 7738
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000144_7354.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[17:54:41] Initializing
wcg_learn_limit = 500000
[17:54:47] Running
[17:54:47] EvaluateFitnessOfStartingGeneSignatures 7738
[18:37:28] Writing final output
[18:37:28] Closing Output Stream
[18:37:28] Cleaning up
Result.out = 1627786.000000
Run complete, CPU time: 10131.422473
18:37:28 (8076): called boinc_finish

</stderr_txt>
]]>
----------------------------------------

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[Edit 1 times, last edit by cowtipperbs at Dec 11, 2013 10:16:32 AM]
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Thyme Lawn
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

3 tasks completed overnight

BETA_ MCM1_ 0000400_ 2393_ 1-- Valid
BETA_ MCM1_ 0000400_ 6594_ 0-- Pending Validation
BETA_ MCM1_ 0000643_ 7872_ 0-- Pending Validation

Both PV tasks are waiting on their wingman.
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"The ultimate test of a moral society is the kind of world that it leaves to its children." - Dietrich Bonhoeffer
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ca05065
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I micro-managed the betas sent on the evening of the 9/12/2013 so 4 were running alongside 3 MCM1s with another 4 MCM1s in status 'waiting to run' i.e. partially complete. I shutdown overnight and started again the next morning.
3 Betas valid
1 beta going through PVer and expected to go invalid
BETA_ MCM1_ 0000144_ 5528_ 0
4 MCM1 valid
3 MCM1 PVal
In other words a complete mix of expected behaviour.
[Dec 11, 2013 10:32:53 AM]   Link   Report threatening or abusive post: please login first  Go to top 
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