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Thread Status: Active Thread Type: Sticky Thread Total posts in this thread: 87
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
The filtering of the rice structures from 100,000+ models per sequence to 5 models per sequence has started. It is about 20% done and should be completed before the end of month. This is being done on 3 GPUs using a new protein structure clustering methdology developed for this project which I am in the process of writing up.
I will be putting the structures up on the website when the process is completed. The functional annotations (the predictions of function from the structures) should follow soon as space is cleared up on our main Linux cluster. This should take another month or so to generate depending on how busy the cluster is. Hong |
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gb009761
Master Cruncher Scotland Joined: Apr 6, 2005 Post Count: 3010 Status: Offline Project Badges:
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Once again, thanks for the update.
----------------------------------------Just goes to prove that, although we've finished crunching all the WU's here, that things are progressing 'in the background'. Keep up the good work, and here's to a successful final outcome of the project. ![]() |
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littlepeaks
Veteran Cruncher USA Joined: Apr 28, 2007 Post Count: 748 Status: Offline Project Badges:
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Thanks for the update, Hong.
Looking forward to viewing the structures. BTW, my wife is Korean, and she says that if she doesn't have rice in a meal, she doesn't feel like she has eaten. |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Thanks for the update, lhhung.
I guess CPU-aware WUs are coming for NRW2 (would that be the proposed initials there?). Also, I hope GPU-aware WUs are in the pipe after that. A strong representation from a project related to food-research here at WCG would make WCG continue to be well-rounded in its humanitarian focus. ; |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Smells like a double blind fishing expedition. Dr. Ling-Hong Hung would have to have the PI do the speaking on that... a WCG gridded NRW2, but strictly speaking, that would have been/would have to be first with WCG (whatever Rumor Central interpretation one can squeeze out of that)
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Falconet
Master Cruncher Portugal Joined: Mar 9, 2009 Post Count: 3315 Status: Offline Project Badges:
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Hi lhhung,
----------------------------------------Any updates you can share? Regards ![]() - AMD Ryzen 5 1600AF 6C/12T 3.2 GHz - 85W - AMD Ryzen 5 2500U 4C/8T 2.0 GHz - 28W - AMD Ryzen 7 7730U 8C/16T 3.0 GHz |
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MONK_DUCK
Cruncher Joined: Mar 6, 2007 Post Count: 37 Status: Offline Project Badges:
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Well a paper was published :Accelerated protein structure comparison using TM-score-GPU.
There are some cites shown by Google Scholar but that's all I've seen. Anything from the Scientists? |
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