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  Thread: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

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Speedy51
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
@Speedy51, I think it's because the Docking starts with Number 0 instead of Number 1.

Could easily be. What I am wanting to know is whether in the case above docking number 28 is getting done twice or whether it is just purely a visual aspect in the log. Have copied part of a longer question from my previous post

Finished Docking number 27
AG Check: Found map file receptor.A.map.
INFO:[13:57:27] Start AutoDock for a_ZINC000787022272.dpf(Job #0)...
INFO: In AutoDock main_autodock()
Beginning AutoDock...
INFO: Setting num_generations: 9999999
About to enter main loop...(dockings already completed: 28)
Finished Docking number 28

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[Edit 1 times, last edit by Speedy51 at Apr 24, 2020 11:27:22 PM]
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nanoprobe
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
Patched executable with PEInfo and 1 task appears to be runing OK on XP 32 bit.

Search here for PEinfo for instructions and download site.

Paul.

Needs to be a 6 now?
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PMH_UK
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
No, needs to change to 5 from 6.

Both Xp 32 bit units validated OK.

Paul.
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Paul.
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[Edit 1 times, last edit by PMH_UK at Apr 25, 2020 8:12:02 AM]
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Crystal Pellet
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
Besides other OPN1´s on other machines already returned,
I've four tasks running om my slowest Windows10 tablet (Intel Atom CPU Z3735F @ 1.33GHz) 32bits.
BETA_OPN1_TEST004_0417_0 7.09 Beta elapsed 17:43:38 60.001% done
BETA_OPN1_TEST004_0418_1 7.09 Beta elapsed 16:50:40 54.010% done
BETA_OPN1_TEST004_0416_0 7.09 Beta elapsed 16:39:54 54.000% done
BETA_OPN1_TEST004_0420_0 7.09 Beta elapsed 16:47:15 50.007% done

Restarting after suspend OK (also when swapped out of memory).
Memory usage has its limits and not that high as Keith feared.

Task details of one task:
Name BETA_OPN1_TEST004_0416_0

Application Beta 7.09
Workunit name BETA_OPN1_TEST004_0416
Estimated app speed 1.12 GFLOPs/sec
Estimated task size 33,991 GFLOPs
CPU time at last checkpoint 16:24:12
CPU time 16:25:00
Elapsed time 16:39:54
Estimated time remaining 14:11:46
Fraction done 54.000%
Virtual memory size 188.27 MB
Working set size 57.39 MB
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mihelm
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
One of my Mac WUs might be interesting: I got the 5th send of BETA_OPN1_TEST029_0401, which first ran three times with 7.08, and which I got with 7.09. And it just returned and went valid immediately.

I took a pretty long time, giving me a chance to check in on it a few times. I had to shut off the computer for the night in between, so the checkpointing worked.

I'm wondering if there might be small memory leak/deallocation issue somewhere. Here is an overview of the RAM utilisation/working set size as the WU progressed:
Fraction done     Working set size
22.008%           141.29 MB
40.005%           142.19 MB
58.001%           142.62 MB
Shutdown for the night
58.002%           109.37 MB
80.005%           112.79 MB
84.005%           112.79 MB  
94.001%           112.79 MB
96.006%           112.79 MB
98.000%           112.79 MB
98.007%           112.79 MB

It's only about 30 MB, so it's not disastrous. Maybe this is perfectly normal and expected, I just thought it's strange the RAM utilisation drops after a reboot, and only fractionally rebounds.

I stored copies of the properties of the WU at those intervals, so if that would be useful, just give the word.

Cheers, michael.
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PMH_UK
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
Some stats from BOINCTasks:

Name Elapsed(CPU) Completed Reported CPU% Status Device Virtual Memory O.S.
BETA_OPN1_TEST003_0331_2 15:55:37 (15:18:47) 25/04/2020 12:39 25/04/2020 12:40 96 Reported: OK + Lenovo1 202.04 MB 113.70 MB Windows 7 64 bit
BETA_OPN1_TEST005_1303_0 08:18:02 (08:06:11) 25/04/2020 04:01 25/04/2020 04:05 98 Reported: OK E744 182.86 MB 117.05 MB Linux 64 bit
BETA_OPN1_TEST005_1276_1 00:01:52 (00:01:50) 24/04/2020 19:37 24/04/2020 19:37 98 Reported: OK + E744 168.25 MB 67.97 MB Linux 64 bit
BETA_OPN1_TEST005_1359_1 07:39:38 (07:36:01) 24/04/2020 23:52 24/04/2020 23:53 99 Reported: OK + 8NUC 178.84 MB 119.38 MB Linux 64 bit
BETA_OPN1_TEST005_1362_1 08:49:16 (08:37:22) 25/04/2020 01:10 25/04/2020 01:14 98 Reported: OK E744 178.97 MB 114.30 MB Linux 64 bit
BETA_OPN1_TEST005_0371_0 01:19:27 (01:18:53) 24/04/2020 17:32 24/04/2020 17:32 99 Reported: OK + 8NUC 178.84 MB 120.64 MB Linux 64 bit
BETA_OPN1_TEST005_1122_0 02:24:52 (02:21:55) 24/04/2020 18:29 24/04/2020 18:32 98 Reported: OK Ubuntu_D 165.66 MB 102.94 MB Linux 32 bit
BETA_OPN1_TEST005_0103_0 00:04:24 (00:04:14) 24/04/2020 17:52 24/04/2020 17:53 96 Reported: OK + Ubuntu_D 110.72 MB 30.54 MB Linux 32 bit
BETA_OPN1_TEST005_1071_1 00:25:47 (00:25:41) 24/04/2020 16:29 24/04/2020 16:30 100 Reported: OK + E744 178.86 MB 113.94 MB Linux 64 bit
BETA_OPN1_TEST004_1058_0 00:04:59 (00:04:53) 24/04/2020 16:07 24/04/2020 16:08 98 Reported: OK + 8NUC 168.24 MB 108.49 MB Linux 64 bit
BETA_OPN1_TEST004_1059_0 00:11:03 (00:10:55) 24/04/2020 16:14 24/04/2020 16:18 99 Reported: OK 8NUC 178.89 MB 119.39 MB Linux 64 bit
BETA_OPN1_TEST004_1049_1 00:09:45 (00:09:43) 24/04/2020 16:14 24/04/2020 16:18 100 Reported: OK E744 178.90 MB 114.02 MB Linux 64 bit
BETA_OPN1_TEST004_1056_0 00:03:17 (00:03:15) 24/04/2020 16:07 24/04/2020 16:08 99 Reported: OK + Lenovo2 111.65 MB 31.98 MB Linux 64 bit
BETA_OPN1_TEST004_1047_0 00:04:07 (00:04:05) 24/04/2020 16:08 24/04/2020 16:11 99 Reported: OK * Lenovo2 111.65 MB 31.98 MB Linux 64 bit
BETA_OPN1_TEST004_1048_1 00:04:22 (00:04:20) 24/04/2020 16:07 24/04/2020 16:08 99 Reported: OK + E744 168.25 MB 104.31 MB Linux 64 bit
BETA_OPN1_TEST004_1055_1 00:03:15 (00:03:12) 24/04/2020 16:13 24/04/2020 16:17 98 Reported: OK Lenovo2 168.25 MB 86.25 MB Linux 64 bit
BETA_OPN1_TEST004_1051_0 01:45:29 (01:24:32) 24/04/2020 23:02 24/04/2020 23:04 80 Reported: OK + unknown2 187.61 MB 106.12 MB Windows XP 32 bit
BETA_OPN1_TEST004_1052_0 03:59:49 (03:35:13) 24/04/2020 21:19 24/04/2020 21:22 90 Reported: OK + unknown2 187.65 MB 106.26 MB Windows XP 32 bit
BETA_OPN1_TEST004_0024_1 00:07:54 (00:07:50) 24/04/2020 16:12 24/04/2020 16:12 99 Reported: OK + Lenovo2 178.84 MB 113.86 MB Linux 64 bit
BETA_OPN1_TEST004_0010_1 00:03:34 (00:03:30) 24/04/2020 16:07 24/04/2020 16:08 98 Reported: OK + Lenovo1 136.19 MB 36.49 MB Windows 7 64 bit
BETA_OPN1_TEST004_0019_1 00:18:49 (00:18:37) 24/04/2020 16:22 24/04/2020 16:26 99 Reported: OK Lenovo1 192.05 MB 110.16 MB Windows 7 64 bit
BETA_OPN1_TEST004_1415_0 14:43:41 (14:24:31) 24/04/2020 23:10 24/04/2020 23:14 98 Reported: OK Lenovo1 192.05 MB 110.72 MB Windows 7 64 bit
BETA_OPN1_TEST003_0151_0 09:06:19 (08:59:25) 24/04/2020 17:11 24/04/2020 17:15 99 Reported: OK Lenovo1 196.14 MB 112.25 MB Windows 7 64 bit
BETA_OPN1_TEST003_0112_1 07:09:02 (07:04:12) 24/04/2020 15:32 24/04/2020 15:32 99 Reported: OK + Lenovo1 192.05 MB 110.47 MB Windows 7 64 bit
BETA_OPN1_TEST003_0191_0 00:09:46 (00:09:33) 24/04/2020 08:14 24/04/2020 08:15 98 Reported: OK + Lenovo1 192.05 MB 110.17 MB Windows 7 64 bit
BETA_OPN1_TEST003_1045_0 00:03:46 (00:03:42) 24/04/2020 08:09 24/04/2020 08:11 98 Reported: OK + Ubuntu_D 165.18 MB 98.85 MB Linux 32 bit
BETA_OPN1_TEST001_1024_0 00:08:13 (00:08:01) 24/04/2020 08:02 24/04/2020 08:03 98 Reported: OK + Ubuntu_D 165.53 MB 105.33 MB Linux 32 bit
BETA_OPN1_TEST001_0041_0 00:29:36 (00:29:27) 24/04/2020 08:15 24/04/2020 08:29 99 Reported: OK * E744 178.86 MB 113.95 MB Linux 64 bit
BETA_OPN1_TEST001_0048_0 00:05:42 (00:05:38) 24/04/2020 08:11 24/04/2020 08:29 99 Reported: OK * E744 178.85 MB 113.85 MB Linux 64 bit
BETA_OPN1_TEST001_0056_0 00:01:52 (00:01:50) 24/04/2020 08:07 24/04/2020 08:29 98 Reported: OK * E744 168.25 MB 81.59 MB Linux 64 bit
Paul.
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Paul.
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nanoprobe
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
No, needs to change to 5 from 6.

Both Xp 32 bit units validated OK.

Paul.

Mine was at 5 and all 4 tasks I received failed with the same error you first reported. Must be something else going on.
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pvh513
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
Got 12 WUs (3 in the first batch and 9 in the second). All returned valid. Caught two in the act and tested suspend/resume from disk. That worked fine. Memory use was 127 MiB on one WU, so that is fine as well. Did notice one WU where there was a large discrepancy in CPU time with my wingman (BETA_OPN1_TEST003_1256). I needed 3.14 hours on a Ryzen 1700X with SMT enabled, while my wingman needed 9.11 hours. Cannot see what kind of CPU (s)he has of course, could be very old...

Looks like the project was created from the FAAH setup. Some files still show that (e.g. the file wcg_faah.state in the slots directory). But I guess that is all cosmetic and not a priority...

Edit - this was all under linux.
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[Edit 1 times, last edit by pvh513 at Apr 25, 2020 1:38:07 PM]
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Wotan
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
A Windows XP computer connected to internet in 2020? At least put Linux on it!
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PMH_UK
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]
Exe to change is wcgrid_beta28_autodock_7.09_windows_intelx86
Fields I changed in Optional(PE) Header from 6 to 5 were 13 MajorOperatingSystemVersion and 17 MajorSubsystemVersion.

Just checked the file I believe is for graphics, wcgrid_beta28_gfx_7.09_windows_intelx86, and that has 5 as supplied.

Paul.
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Paul.
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