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World Community Grid Forums
Category: Beta Testing
Forum: Beta Test Support Forum
Thread: New Beta project WU's are crunching in WCG... |
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Thread Status: Active Total posts in this thread: 145
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello GIBA,
The new Autodock program that we are testing for FAAH and DDDT has a bug fix for an algorithm using Hamiltonian quaternions (so I am told). I assume that the algorithm is involved in 3-D rotations for molecules since 3-D rotations is what computer graphics normally use quaternions for. It also has been compiled with the new BOINC 6 API, which is backwards compatible. This lets us get ahead of the game. Lawrence |
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GIBA
Ace Cruncher Joined: Apr 25, 2005 Post Count: 5374 Status: Offline |
Hello GIBA, The new Autodock program that we are testing for FAAH and DDDT has a bug fix for an algorithm using Hamiltonian quaternions (so I am told). I assume that the algorithm is involved in 3-D rotations for molecules since 3-D rotations is what computer graphics normally use quaternions for. It also has been compiled with the new BOINC 6 API, which is backwards compatible. This lets us get ahead of the game. Lawrence Hey Lawrence very cool ! It's sound very good for me... I have a M. S. in Quantum Physics, and teach and work a lot in research years ago, so I did not listen about Quartenions in the last years my friend... great surprise see that it rising again in other field of sciences with great aplicability (technology to solve problems of Diseases through grid computing... terrific guy !). At my studies times, Quartenions used to be the best Math tool to solve Group Theory hard problems (commonly using quartenions called Hamiltonians), mainly linked with Hadron 3D molecular structures (High Energies Physics studies)... it has a fantastic Math abstratism approach to solve a lot of problems in Physics related with 3D randomic movement... I can't imagine bether approach than WCG apply it to establish autodocks parameters and so on... very cool !  Hope that it really leapfrog our position in this game... Thank you very much for your explanation ! Best Regards. Giba. 
Cheers ! GIB@
---------------------------------------- Join BRASIL - BRAZIL@GRID team and be very happy ! http://www.worldcommunitygrid.org/team/viewTeamInfo.do?teamId=DF99KT5DN1 [Edit 1 times, last edit by GIBA at Apr 18, 2008 1:43:33 PM] |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
I have a beta FAAH work unit on my PPC Mac and its in a loop and won't go past 12%. Should I let it loop for a while and see what happens ?
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
I have a beta FAAH work unit on my PPC Mac and its in a loop and won't go past 12%. Should I let it loop for a while and see what happens ? I got tired of it looping so I stopped boinc and restarted it. It now went past 12% but now the boinc process, that is run by the boinc_master user, is not responding. I'm betting that this will end up hung like the old faah and dddt work units.  |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hi!
8 work unit crunched away so far, but the 9th produced an error. Task name: BETA_oryza_sativa_indica_9311_all_0000012450. The quorum shows another work unit with error after 0.34 (mine needed 1.84 to stop), but some were pending validation. Result log: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> too many normally harmless exit(s) </message> <stderr_txt> wcg_seed 31649 running time: 12.776482 <<then as usual up to>> wcg_seed 21015 running time: 6718.042664 wcg_seed 21058 write_coords(): couldn't open best1.pdb for appending! wcg_seed 21139 unable to allocate memory for angular distributions at residue 10 wcg_seed 21143 unable to allocate memory for angular distributions at residue 10 <<repeated...>> wcg_seed 21489 unable to allocate memory for angular distributions at residue 10 </stderr_txt> ]]> stdoutae.txt: 17-Apr-2008 22:34:39 [World Community Grid] [checkpoint_debug] result BETA_oryza_sativa_indica_9311_all_0000012450_7 checkpointed 17-Apr-2008 22:36:36 [World Community Grid] Task BETA_oryza_sativa_indica_9311_all_0000012450_7 exited with a DLL initialization error. 17-Apr-2008 22:36:36 [World Community Grid] If this happens repeatedly you may need to reboot your computer. 17-Apr-2008 22:36:36 [World Community Grid] Restarting task BETA_oryza_sativa_indica_9311_all_0000012450_7 using beta4 version 603 Those three lines were repeated 99 times, then it said 17-Apr-2008 22:38:24 [World Community Grid] Computation for task BETA_oryza_sativa_indica_9311_all_0000012450_7 finished I run Boinc 5.10.45 on a notebook with Intel Core Duo T9300 @2.5GHz with Windows Vista Home. Tell me if you need some more information. Regards. Matthias |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Thanks mweisensee,
This is the sort of report that helps the programmers. Lawrence |
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[B-S] Gamma-Ray
Cruncher Joined: Feb 27, 2008 Post Count: 24 Status: Offline |
Just about wrapped up my many 1 hour beta's, had no issues at all with any of them.
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Sekerob
Ace Cruncher Joined: Jul 24, 2005 Post Count: 20043 Status: Offline |
Done 3 of the 2 hour version.... it finishes with the first "unit of data" to go over that limit time restriction. These per knreed are lasting about 90 seconds, but obviously with computer speed varying, they can last from under one minute to several minutes, explaining that some will see 2:00:01 hours and others will see 2:03:01 hours on a job.
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WCG
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
122 betas of all types now completed succesfully here without any issues
 ..........machines are now hungry for more   |
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Sekerob
Ace Cruncher Joined: Jul 24, 2005 Post Count: 20043 Status: Offline |
122 betas of all types now completed succesfully here without any issues ..........machines are now hungry for more Nope, you had your quota for 2008 and 2009....
WCG
Please help to make the Forums an enjoyable experience for All! |
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