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World Community Grid Forums
Category: Completed Research
Forum: FightAIDS@Home
Thread: FAAH Experiment 41 Announcement |
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Thread Status: Active Total posts in this thread: 219
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rbotterb
Senior Cruncher United States Joined: Jul 21, 2005 Post Count: 401 Status: Offline Project Badges: 
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Just got Autodock WUs in 43484 range and just picked up two VINA WUs in 3VQ4 group as well in the batch I just got 20 minutes ago....
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rbotterb
Senior Cruncher United States Joined: Jul 21, 2005 Post Count: 401 Status: Offline Project Badges:
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The two VINA WUs were marked 46521....
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Who (and where) has said VINA is E42  http://fightaidsathome.scripps.edu/status Though I'm getting WUs from batches that appear to be over 46395.. is there an E47? or maybe the batch ranges changed? |
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l_mckeon
Senior Cruncher Joined: Oct 20, 2007 Post Count: 439 Status: Offline Project Badges:
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Who (and where) has said VINA is E42 http://fightaidsathome.scripps.edu/status Though I'm getting WUs from batches that appear to be over 46395.. is there an E47? or maybe the batch ranges changed? Complaint to Scripps: the "HIVE" graphic near the top of the page linked to above is a .png file of just short of 800KB. You could have converted it to a .jpg and probably saved 700KB or more. Have mercy on those of us with slow, expensive, wireless internet connections. |
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martin64
Senior Cruncher Germany Joined: May 11, 2009 Post Count: 445 Status: Offline Project Badges:
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Though I'm getting WUs from batches that appear to be over 46395.. is there an E47? or maybe the batch ranges changed? I guess E42-46 as described on the project page is just a fraction of what has been submitted. Mr Perryman wrote in his announcement in the forum: I'll update the FAAH “Status” page (http://fightaidsathome.scripps.edu/status ) soon to describe the 182 million AD Vina docking jobs that I just created and submitted to the FAAH queue. On the status page he wrote: Experiments 42 through 46 (that is, AD Vina Experiments 1 to 5) involve screening ~ 5.6 million compounds against a recently-discovered allosteric site of HIV reverse transcriptase. Any idea how the relation between "compounds" and "docking jobs" is? Kind regards, Martin  |
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Falconet
Master Cruncher Portugal Joined: Mar 9, 2009 Post Count: 3295 Status: Offline Project Badges: 
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I believe a docking job is to dock a compound to a target using several factors and variables. There are more docking jobs than compounds because of the multiple variables being considered (I think).
----------------------------------------AMD Ryzen 5 1600AF 6C/12T 3.2 GHz - 85W AMD Ryzen 5 2500U 4C/8T 2.0 GHz - 28W AMD Ryzen 7 7730U 8C/16T 3.0 GHz |
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branjo
Master Cruncher Slovakia Joined: Jun 29, 2012 Post Count: 1892 Status: Offline Project Badges: 
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Who (and where) has said VINA is E42 http://fightaidsathome.scripps.edu/status Though I'm getting WUs from batches that appear to be over 46395.. is there an E47? or maybe the batch ranges changed? Thanks becay  Cheers   Crunching@Home since January 13 2000. Shrubbing@Home since January 5 2006  |
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mgl_ALPerryman
FightAIDS@Home, GO Fight Against Malaria and OpenZika Scientist USA Joined: Aug 25, 2007 Post Count: 283 Status: Offline Project Badges:
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Hi martin64,
I have now described all the AD Vina jobs that I submitted to FAAH thus far on the Status page. See http://fightaidsathome.scripps.edu/status The last batch I submitted was 63525, which is the end of Experiment 51. 1 docking job involves docking 1 compound versus 1 model of a target. One "work unit" sent to an individual donor machine will involve either (a) several different AD Vina jobs (since they are so fast), or (b) a fraction of the 100 runs that are performed for a single AutoDock job. Thus, several AutoDock "work units" are combined to complete one full AutoDock job. A "batch" (such as 63525) with AD Vina involves docking 10,000 different compounds versus 1 model of a target, while a "batch" with AutoDock involves docking 1,000 different compounds versus 1 model of a target. Thank you for your interest and your support, Dr. Alex L. Perryman |
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mgl_ALPerryman
FightAIDS@Home, GO Fight Against Malaria and OpenZika Scientist USA Joined: Aug 25, 2007 Post Count: 283 Status: Offline Project Badges:
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Hello CJSLman,
Thank you for the update. Performing 300 CPU years of calculations for FightAIDS@Home in a single day on World Community Grid is quite an achievement! FAAH is getting a larger share of the total CPU power of World Community Grid right now, because the other projects are not submitting enough jobs. When their queues start to run dry, the FAAH team always picks up the slack. ;) Thank you for your interest and your support, Alex L. Perryman, Ph.D. |
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mgl_ALPerryman
FightAIDS@Home, GO Fight Against Malaria and OpenZika Scientist USA Joined: Aug 25, 2007 Post Count: 283 Status: Offline Project Badges:
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Hello l_mckeon,
I solved that problem today. I converted the HIVE logo into a jpg file, and I resized the image. It is now < 200 KB. Thank you for your support, Alex L. Perryman, Ph.D. |
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