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Update on Progress for FightAIDS@Home

Experiment #1 which was our initial screen of the NCI diversity set against 270 protease variants has been analyzed and the first cut at promising leads was identified. We selected the top 40 of these compounds and ordered them from the National Cancer Institute. They arrived yesterday and they have been delivered to our collaborators here at Scripps for experimental assay. They will first be assayed against wild-type HIV protease. Subsequently they will be tested against a number of HIV protease mutants that are available. We anxiously await the first results from these assays.

Thanks to all of you who have helped bring us to this point.

Art Olson
[Sep 14, 2006 9:04:47 PM]   Link   Report threatening or abusive post: please login first  Go to top 
depriens
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Re: Update on Progress for FightAIDS@Home

Many thanks for the update! Just wondering, are these some kind of Cancer compound? I wouldn't think so, but because they were ordered at the National Cancer Institute?
Are these compounds tested "in real life"? I mean, not virtual?

Great to see that we actually are getting results!
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[Sep 15, 2006 6:19:15 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Sekerob
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Re: Update on Progress for FightAIDS@Home

I think the NCI functions as central ripository of all compounds known and stocked, which medical research labs can request. Maybe there is also a quality control function in there to ensure, that all labs work with the same compound when they say to work with compound X.
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Re: Update on Progress for FightAIDS@Home

... are these some kind of Cancer compound? ...
Are these compounds tested "in real life"? I mean, not virtual?


Not necessarily cancer compounds.
From the web site of the NCI's DTP (that supplies the compounds):
"As the drug discovery and development arm of the National Cancer
Institute, the Developmental Therapeutics Program (DTP) plans,
conducts, and facilitates development of therapeutic agents for
cancer and AIDS."

Yes, when we say "experimental assay" that means an experiment
in the lab in which the real compounds are assayed for their
ability to inhibit the enzyme activity of the purified (i.e.
isolated) HIV-1 protease. This is the next step to confirm
AutoDock's prediction that they might "fit" and we learn
from both correct and incorrect AutoDock predictions.

Thank you again for your participation!

Lindy Lindstrom
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Re: Update on Progress for FightAIDS@Home

Hello, I have a couple of questions.
    How much percentage of the project has been finished already?
And
    how long time is expected to be needed if computer resources would keep/increase at the same level?


thanks,
suguruhirahara
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Sekerob
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Re: Update on Progress for FightAIDS@Home

Suguruhirahara, there is another thread that tracks the Project Status, so please re-visit......as of last peek there it was....well go and have a look wink
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[Edit 1 times, last edit by Sekerob at Sep 17, 2006 5:28:28 AM]
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