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World Community Grid Forums
Category: Active Research
Forum: OpenPandemics - COVID-19 Project
Thread: heaps of errors all of a sudden |
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Thread Status: Active Total posts in this thread: 48
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erich56
Senior Cruncher Austria Joined: Feb 24, 2007 Post Count: 300 Status: Offline Project Badges: 
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within the past 6 hours or so, many tasks show "error" in the final result, regardless on which of my several PCs they have been processed.
What's the problem? |
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Country Bumkin
Cruncher Australia Joined: May 14, 2008 Post Count: 14 Status: Offline Project Badges: 
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I have had this error on different machines.
----------------------------------------<core_client_version>7.16.6</core_client_version> <![CDATA[ <message> process exited with code 254 (0xfe, -2)</message> <stderr_txt> ../../projects/www.worldcommunitygrid.org/wcgrid_opng_autodockgpu_7.28_x86_64-pc-linux-gnu__opencl_intel_gpu_102 -jobs OPNG_0086589_00097.job -input OPNG_0086589_00097.zip -seed 1243857750 -wcgruns 5500 -wcgdpf 110 INFO: Using gpu device from app init data 0 INFO:[15:41:41] Start AutoGrid... autogrid4: ERROR: The number of atom types found in the receptor PDBQT (8) does not match the number specified by the "receptor_types" command (7) in the GPF! autogrid4: ERROR: Sorry, AutoGrid cannot continue. This also seemed a bit unusual for the same WU.... OPNG_ 0086576_ 00018_ 3-- Linux Ubuntu Ubuntu 18.04.2 LTS [4.18.0-15-generic|libc 2.27 (Ubuntu GLIBC 2.27-3ubuntu1)] 728 Error 8/18/21 03:53:36 8/18/21 03:55:44 0.00 0.0 / 0.0 OPNG_ 0086576_ 00018_ 2-- Linux Ubuntu Ubuntu 20.04.2 LTS [5.4.0-81-generic|libc 2.31 (Ubuntu GLIBC 2.31-0ubuntu9.2)] 728 Error 8/18/21 03:52:38 8/18/21 03:54:47 0.00 0.0 / 0.0 OPNG_ 0086576_ 00018_ 1-- Microsoft Windows 10 Professional x64 Edition, (10.00.19043.00) 728 Error 8/18/21 03:23:43 8/18/21 03:52:34 0.00 0.0 / 0.0 OPNG_ 0086576_ 00018_ 0-- Microsoft Windows 10 Professional x64 Edition, (10.00.19043.00) 728 Error 8/18/21 02:51:03 8/18/21 03:23:40 0.00 0.0 / 0.0 OPNG_ 0086576_ 00018_ 4-- - Other 0.00 0.0 / 0.0
Regards C Bumkin
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Richard Haselgrove
Senior Cruncher United Kingdom Joined: Feb 19, 2021 Post Count: 360 Status: Offline Project Badges: 
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Also got an error on six tasks like OPNG_0086584_00022
The error message (when I drilled down to std_err.txt) was autogrid4: ERROR: The number of atom types found in the receptor PDBQT (8) does not match the number specified by the "receptor_types" command (7) in the GPF! This indicates a badly-formed batch of tasks - an error at the project end, and nothing to do with anybody's personal machine. Just let them run as normal, and let them work their way out of the system - no need to make any changes to your settings. |
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erich56
Senior Cruncher Austria Joined: Feb 24, 2007 Post Count: 300 Status: Offline Project Badges:
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Thanks, Richard, for the hint.
A check on my failed tasks basically shows the same in stderr: autogrid4: ERROR: The number of atom types found in the receptor PDBQT (8) does not match the number specified by the "receptor_types" command (7) in the GPF! autogrid4: ERROR: Sorry, AutoGrid cannot continue. |
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biini
Senior Cruncher Finland Joined: Jan 25, 2007 Post Count: 334 Status: Offline Project Badges: 
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Result Log
----------------------------------------Result Name: OPNG_ 0086594_ 00013_ 4-- <core_client_version>7.16.11</core_client_version> <![CDATA[ <message> (unknown error) - exit code 4294967294 (0xfffffffe)</message> <stderr_txt> projects/www.worldcommunitygrid.org/wcgrid_opng_autodockgpu_7.28_windows_x86_64__opencl_nvidia_102 -jobs OPNG_0086594_00013.job -input OPNG_0086594_00013.zip -seed 1158571054 -wcgruns 4000 -wcgdpf 80 INFO: Using gpu device from app init data 0 INFO:[10:57:10] Start AutoGrid... autogrid4: ERROR: The number of atom types found in the receptor PDBQT (8) does not match the number specified by the "receptor_types" command (7) in the GPF! autogrid4: ERROR: Sorry, AutoGrid cannot continue. </stderr_txt> ]]> |
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Acibant
Advanced Cruncher USA Joined: Apr 15, 2020 Post Count: 126 Status: Offline Project Badges:
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OPNG_0086592_00053 and OPNG_0086589_00085 errored out for every person they were sent to with the same error you guys got (ruining my reliable status and forcing re-validation of the system). It looks like they are including more jobs in each work unit in just the past day and the new units take longer but give more credits (0.05 hours/500-600 credits before and 0.10-0.17 hours/1100-1500 credits after). (Multiply the BOINC credits by 7 to get the WCG points.)
---------------------------------------- [Edit 2 times, last edit by Acibant at Aug 18, 2021 12:51:33 PM] |
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bozz4science
Advanced Cruncher Germany Joined: May 3, 2020 Post Count: 104 Status: Offline Project Badges: 
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I have now seen these types of errors as well for the last few hours. It does seem to me as if these have just misspecified input files that causes the algorithm to abort the task early/nearly instantly. It also appears as if the latest series of tasks are docking more elaborate molecules as runtimes increased a lot over the past day as did awarded credits; or simply package more tasks into the WU as suggested in the above post by Acibant
---------------------------------------- AMD Ryzen 3700X @ 4.0 GHz / GTX1660S Intel i5-4278U CPU @ 2.60GHz [Edit 2 times, last edit by bozz4science at Aug 18, 2021 1:59:39 PM] |
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Richard Haselgrove
Senior Cruncher United Kingdom Joined: Feb 19, 2021 Post Count: 360 Status: Offline Project Badges:
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I've looked through my account (multiple machines), and found examples of this particular type of error from batches:
OPNG_0086575 OPNG_0086577 OPNG_0086579 OPNG_0086584 OPNG_0086585 OPNG_0086589 OPNG_0086592 OPNG_0086594 OPNG_0086595 OPNG_0086596 OPNG_0086603 - all with the "The number of atom types found ... does not match" error, and all since 01:40 UTC today. |
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True54Blue
Advanced Cruncher Joined: Nov 17, 2004 Post Count: 97 Status: Offline Project Badges:
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To that list you can add
----------------------------------------OPNG_0086586 OPNG_0086600  |
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biini
Senior Cruncher Finland Joined: Jan 25, 2007 Post Count: 334 Status: Offline Project Badges:
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Didnt check for duplicates
----------------------------------------OPNG_0086575_00003_0 OPNG_0086575_00004_0 OPNG_0086575_00013_2 OPNG_0086575_00015_1 OPNG_0086575_00018_1 OPNG_0086575_00022_3 OPNG_0086575_00023_0 OPNG_0086575_00030_2 OPNG_0086575_00044_0 OPNG_0086575_00048_0 OPNG_0086575_00049_0 OPNG_0086575_00052_0 OPNG_0086575_00053_4 OPNG_0086575_00054_0 OPNG_0086575_00055_0 OPNG_0086575_00056_0 OPNG_0086575_00059_2 OPNG_0086575_00062_0 OPNG_0086575_00071_3 OPNG_0086575_00074_2 OPNG_0086575_00080_1 OPNG_0086575_00083_4 OPNG_0086575_00097_4 OPNG_0086575_00116_4 OPNG_0086576_00016_1 OPNG_0086576_00025_4 OPNG_0086576_00034_0 OPNG_0086576_00036_0 OPNG_0086576_00060_4 OPNG_0086576_00061_1 OPNG_0086576_00069_4 OPNG_0086576_00071_4 OPNG_0086576_00085_3 OPNG_0086576_00093_0 OPNG_0086576_00095_0 OPNG_0086576_00102_4 OPNG_0086576_00108_3 OPNG_0086577_00009_4 OPNG_0086577_00047_3 OPNG_0086577_00078_3 OPNG_0086577_00094_4 OPNG_0086580_00044_3 OPNG_0086580_00050_3 OPNG_0086580_00085_3 OPNG_0086584_00038_3 OPNG_0086585_00013_1 OPNG_0086585_00041_2 OPNG_0086585_00089_2 OPNG_0086585_00108_2 OPNG_0086585_00109_3 OPNG_0086587_00086_2 OPNG_0086588_00013_4 OPNG_0086588_00101_3 OPNG_0086589_00013_3 OPNG_0086589_00027_2 OPNG_0086589_00048_1 OPNG_0086589_00089_0 OPNG_0086589_00106_2 OPNG_0086592_00015_0 OPNG_0086592_00018_1 OPNG_0086592_00019_1 OPNG_0086592_00023_0 OPNG_0086592_00024_0 OPNG_0086592_00027_2 OPNG_0086592_00057_1 OPNG_0086592_00062_0 OPNG_0086592_00070_0 OPNG_0086592_00075_0 OPNG_0086592_00080_1 OPNG_0086592_00081_2 OPNG_0086592_00100_1 OPNG_0086592_00104_3 OPNG_0086592_00117_4 OPNG_0086592_00136_2 OPNG_0086592_00140_0 OPNG_0086593_00097_4 OPNG_0086594_00013_4 OPNG_0086594_00014_2 OPNG_0086594_00041_0 OPNG_0086594_00060_0 OPNG_0086594_00064_0 OPNG_0086594_00067_1 OPNG_0086594_00076_1 OPNG_0086594_00090_1 OPNG_0086594_00105_0 OPNG_0086594_00108_2 OPNG_0086595_00002_4 OPNG_0086595_00019_1 OPNG_0086596_00053_3 OPNG_0086596_00073_4 OPNG_0086596_00074_4 OPNG_0086596_00107_4 OPNG_0086597_00087_3 OPNG_0086599_00062_3 OPNG_0086600_00079_3 OPNG_0086600_00083_2 OPNG_0086600_00097_4 OPNG_0086601_00012_2 OPNG_0086601_00019_0 OPNG_0086601_00094_4 OPNG_0086602_00020_3 OPNG_0086602_00053_4 OPNG_0086603_00004_2 OPNG_0086603_00115_3 OPNG_0086603_00118_3 |
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