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Category: Completed Research Forum: Uncovering Genome Mysteries Thread: Welcome to the Uncovering Genome Mysteries project |
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Thread Status: Active Thread Type: Sticky Thread Total posts in this thread: 44
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Dear World Community Grid volunteers,
----------------------------------------We are thrilled to tell you about our new project, Uncovering Genome Mysteries. Antibiotics such as Penicillin, bacteria that clean up oil spills, and asprin are just a few of the many valuable products we discovered in organisms, small and large, in the soil, water and forests. This area of study is still in its infancy: most of the organisms in Earth's biosphere have yet to be identified, let alone understood at the genetic level. Uncovering Genome Mysteries plans to change that by examining close to 200 million genes from a wide variety of life forms, such as microorganisms found on seaweeds from Australian coastlines and in the Amazon river. The predicted proteins they encode will be compared against each other to assess their similarity. When two proteins are similar, and the function of one protein is already known, this similarity allows scientists to make educated predictions about the function of the other. Uncovering Genome Mysteries will create and publish a database of protein sequence comparison information for all scientists to reference. The scale of the task is enormous. It is only feasible thanks to the massive computational power of World Community Grid. While sequences from all forms of life will be processed, microorganisms will receive a special focus. The goals of the project are to: • Discover new protein functions and augmenting knowledge about biochemical processes in general • Identify how organisms interact with each other and the environment • Document the current baseline microbial diversity • Understand and model complex microbial systems You can find more in-depth information and explanations about the project here . We hope you will find our project interesting, and support its goals. With your help, we will discover many mysteries of the microbial world and how that knowledge can help solve human and world problems. Torsten Thomas and Wim Degrave [Edit 1 times, last edit by TKH at Oct 14, 2014 8:36:24 PM] |
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Nangwaya
Cruncher Joined: Sep 30, 2014 Post Count: 3 Status: Offline |
Is this a GPU project?
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uplinger
Former World Community Grid Tech Joined: May 23, 2005 Post Count: 3952 Status: Offline Project Badges: |
This is not a GPU project. It is for CPU only.
Thanks, -Uplinger |
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Falconet
Master Cruncher Portugal Joined: Mar 9, 2009 Post Count: 3295 Status: Offline Project Badges: |
Yay, a new project!!!
----------------------------------------Good luck! AMD Ryzen 5 1600AF 6C/12T 3.2 GHz - 85W AMD Ryzen 5 2500U 4C/8T 2.0 GHz - 28W AMD Ryzen 7 7730U 8C/16T 3.0 GHz |
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Crystal Pellet
Veteran Cruncher Joined: May 21, 2008 Post Count: 1316 Status: Offline Project Badges: |
I hope you're concentrating on uncovered genomes.
----------------------------------------Several projects has already databases with genome information searched for sequences by the SIMAP project. Related projects and scientific usage [Edit 1 times, last edit by Crystal Pellet at Oct 14, 2014 9:02:25 PM] |
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anhhai
Veteran Cruncher Joined: Mar 22, 2005 Post Count: 839 Status: Offline Project Badges: |
Do you know the expected runtime for each WU? Are all WUs runtime about the same or will it vary a lot similar to beta (you mention about combining WUs to make some WUs longer)
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uplinger
Former World Community Grid Tech Joined: May 23, 2005 Post Count: 3952 Status: Offline Project Badges: |
The expected runtime for each work unit is to average around 3 hours. This is for the entire grid average. We did some shuffling of the genes in the files to help randomize what genome sequences are next to each other. In theory this will help level out the runtimes and the output sizes.
Thanks, -Uplinger |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Welcome to the WCG fora, Torsten Thomas and Wim Degrave.
People here like to be kept informed and talked to, so any progress updates or just general comments about how the project is going, or ways the data might be used, are ALWAYS welcome. I've already started to process the WUs for this project as, I'm sure, have many others. All the very best with this work! |
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KWSN - A Shrubbery
Master Cruncher Joined: Jan 8, 2006 Post Count: 1585 Status: Offline |
And I would have put money on a Monday release.
----------------------------------------Good work all. Take a well deserved rest and maybe even a couple comp days. Distributed computing volunteer since September 27, 2000 |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
WTG - A new project - going for my 4th 5 year badge!!!
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