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Welcome to the Uncovering Genome Mysteries project

Dear World Community Grid volunteers,

We are thrilled to tell you about our new project, Uncovering Genome Mysteries.

Antibiotics such as Penicillin, bacteria that clean up oil spills, and asprin are just a few of the many valuable products we discovered in organisms, small and large, in the soil, water and forests. This area of study is still in its infancy: most of the organisms in Earth's biosphere have yet to be identified, let alone understood at the genetic level.


Uncovering Genome Mysteries plans to change that by examining close to 200 million genes from a wide variety of life forms, such as microorganisms found on seaweeds from Australian coastlines and in the Amazon river. The predicted proteins they encode will be compared against each other to assess their similarity. When two proteins are similar, and the function of one protein is already known, this similarity allows scientists to make educated predictions about the function of the other. Uncovering Genome Mysteries will create and publish a database of protein sequence comparison information for all scientists to reference.


The scale of the task is enormous. It is only feasible thanks to the massive computational power of World Community Grid. While sequences from all forms of life will be processed, microorganisms will receive a special focus.

The goals of the project are to:

• Discover new protein functions and augmenting knowledge about biochemical processes in general
• Identify how organisms interact with each other and the environment
• Document the current baseline microbial diversity
• Understand and model complex microbial systems

You can find more in-depth information and explanations about the project here .

We hope you will find our project interesting, and support its goals. With your help, we will discover many mysteries of the microbial world and how that knowledge can help solve human and world problems.

Torsten Thomas and Wim Degrave
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[Edit 1 times, last edit by TKH at Oct 14, 2014 8:36:24 PM]
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Nangwaya
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Re: Welcome to the Uncovering Genome Mysteries project

Is this a GPU project?
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[Oct 14, 2014 8:36:09 PM]   Link   Report threatening or abusive post: please login first  Go to top 
uplinger
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Re: Welcome to the Uncovering Genome Mysteries project

This is not a GPU project. It is for CPU only.

Thanks,
-Uplinger
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Falconet
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Re: Welcome to the Uncovering Genome Mysteries project

Yay, a new project!!!

Good luck!
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AMD Ryzen 5 1600AF 6C/12T 3.2 GHz - 85W
AMD Ryzen 5 2500U 4C/8T 2.0 GHz - 28W
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Crystal Pellet
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Re: Welcome to the Uncovering Genome Mysteries project

I hope you're concentrating on uncovered genomes.

Several projects has already databases with genome information searched for sequences by the SIMAP project.
Related projects and scientific usage
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[Edit 1 times, last edit by Crystal Pellet at Oct 14, 2014 9:02:25 PM]
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anhhai
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Re: Welcome to the Uncovering Genome Mysteries project

Do you know the expected runtime for each WU? Are all WUs runtime about the same or will it vary a lot similar to beta (you mention about combining WUs to make some WUs longer)
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uplinger
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Re: Welcome to the Uncovering Genome Mysteries project

The expected runtime for each work unit is to average around 3 hours. This is for the entire grid average. We did some shuffling of the genes in the files to help randomize what genome sequences are next to each other. In theory this will help level out the runtimes and the output sizes.

Thanks,
-Uplinger
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Re: Welcome to the Uncovering Genome Mysteries project

Welcome to the WCG fora, Torsten Thomas and Wim Degrave.

People here like to be kept informed and talked to, so any progress updates or just general comments about how the project is going, or ways the data might be used, are ALWAYS welcome.

I've already started to process the WUs for this project as, I'm sure, have many others.

All the very best with this work!
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KWSN - A Shrubbery
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Re: Welcome to the Uncovering Genome Mysteries project

And I would have put money on a Monday release.

Good work all. Take a well deserved rest and maybe even a couple comp days.
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Distributed computing volunteer since September 27, 2000
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Re: Welcome to the Uncovering Genome Mysteries project

WTG - A new project - going for my 4th 5 year badge!!!
[Oct 14, 2014 11:39:26 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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