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World Community Grid Forums
Category: Completed Research
Forum: Help Fight Childhood Cancer Project Forum
Thread: Autodock 4 Error |
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Thread Status: Active Total posts in this thread: 36
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mclaver
Veteran Cruncher Joined: Dec 19, 2005 Post Count: 566 Status: Offline Project Badges: 
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It looks like I am starting to get errors on HFCC today. Everyone else who processed these work units also got errors.
----------------------------------------Result Name Device Name Status Sent Time Time Due / Return Time CPU Time (hours) Claimed/ Granted BOINC Credit HFCC_ 00017650_ TrkB_ 0000_ 0-- fox-amd-x4-940 Error 3/14/09 23:56:16 3/17/09 11:52:13 0.00 0.1 / 0.0 HFCC_ 00017606_ TrkB_ 0000_ 4-- ASUS-i7-965 Error 3/17/09 05:18:13 3/17/09 05:25:11 0.00 0.1 / 0.0 Result Log <core_client_version>6.6.0</core_client_version> <![CDATA[ <message> - exit code -1 (0xffffffff) </message> <stderr_txt> Failed to get VersionInfo size: 1812 INFO:[02:26:35] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[02:26:51] End AutoGrid... Beginning AutoDock... INFO: Setting num_generations: 10000 autodock4: ERROR: autodock4: ERROR: 819 runs requested, but only dimensioned for 256. Change "MAX_RUNS" in "constants.h". autodock4: Aborting... autodock4: Unsuccessful Completion. </stderr_txt> ]]> Return to Top    |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
 I just checked the result log on a failing WU and I see this - autodock4: ERROR: ERROR: Too many torsions have been found (i.e. 35); maximum allowed is 32. Does anyone have any ideas about this failing scenario? |
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JmBoullier
Former Community Advisor Normandy - France Joined: Jan 26, 2007 Post Count: 3716 Status: Offline Project Badges: 
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ERROR: Too many torsions have been found (i.e. 35); maximum allowed is 32. Does anyone have any ideas about this failing scenario? I think it is the first time we see this error for this project. Thank you for reporting it. I'll let the techs give you the final word on it but it looks like other errors linked to the particular nature of the scientific work contained in this WU, not to anything bad in your machine/environment. Cheers. Jean. |
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Sekerob
Ace Cruncher Joined: Jul 24, 2005 Post Count: 20043 Status: Offline |
Thanks for the update. Probably no need for further reports on this, but here's mine anyway: HFCC_ t1_ 00002770_ TrkB_ 0000_ 0-- Result Log <core_client_version>6.2.28</core_client_version> <![CDATA[ <message> - exit code -1 (0xffffffff) </message> <stderr_txt> Failed to get VersionInfo size: 1812 INFO:[11:29:20] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[11:29:42] End AutoGrid... Beginning AutoDock... INFO: Setting num_generations: 10000 autodock4: ERROR: autodock4: ERROR: 418 runs requested, but only dimensioned for 256. Change "MAX_RUNS" in "constants.h". autodock4: Aborting... autodock4: Unsuccessful Completion. </stderr_txt> ]]> Please see notice by uplinger advicing that replacement workunits have a fix for this. http://www.worldcommunitygrid.org/forums/wcg/viewthread?thread=24880
WCG
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
I've also got an error today:
HFCC_ t1_ 00019263_ TrkB_ 0001_ 2-- <core_client_version>6.2.19</core_client_version> <![CDATA[ <message> A network adapter hardware error occurred. (0x39) - exit code 57 (0x39) </message> <stderr_txt> Failed to get VersionInfo size: 1812 INFO:[16:46:08] Start AutoGrid... ERROR: Unknown ligand atom type Si add parameters for it to the parameter library first! autogrid failed. rc = 57. Exiting called boinc_finish </stderr_txt> ]]> |
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mclaver
Veteran Cruncher Joined: Dec 19, 2005 Post Count: 566 Status: Offline Project Badges:
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It looks like this may not be fixed...just got this.
----------------------------------------Result Name Device Name Status Sent Time Time Due / Return Time CPU Time (hours) Claimed/ Granted BOINC Credit HFCC_ 00020855_ TrkB_ 0000_ 0-- fox-amd-x4-940 Error 3/15/09 15:27:49 3/20/09 10:15:15 0.00 0.1 / 0.0 Result Log <core_client_version>6.6.0</core_client_version> <![CDATA[ <message> - exit code -1 (0xffffffff) </message> <stderr_txt> Failed to get VersionInfo size: 1812 INFO:[03:40:05] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[03:40:22] End AutoGrid... Beginning AutoDock... autodock4: *** WARNING! Non-integral total charge (-1.5 e) on ligand! *** INFO: Setting num_generations: 10000 autodock4: ERROR: autodock4: ERROR: 819 runs requested, but only dimensioned for 256. Change "MAX_RUNS" in "constants.h". autodock4: Aborting... autodock4: Unsuccessful Completion. </stderr_txt> ]]> |
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uplinger
Former World Community Grid Tech Joined: May 23, 2005 Post Count: 3952 Status: Offline Project Badges: 
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mclaver,
This copy was assigned on the 15th, which was before I had fixed the work units. We did not abort the error work units on the server because most of them were already completely errored out or very close to it. Since little cpu power was used, most of these work units came back very quickly. -Uplinger It looks like this may not be fixed...just got this. Result Name Device Name Status Sent Time Time Due / Return Time CPU Time (hours) Claimed/ Granted BOINC Credit HFCC_ 00020855_ TrkB_ 0000_ 0-- fox-amd-x4-940 Error 3/15/09 15:27:49 3/20/09 10:15:15 0.00 0.1 / 0.0 Result Log <core_client_version>6.6.0</core_client_version> <![CDATA[ <message> - exit code -1 (0xffffffff) </message> <stderr_txt> Failed to get VersionInfo size: 1812 INFO:[03:40:05] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[03:40:22] End AutoGrid... Beginning AutoDock... autodock4: *** WARNING! Non-integral total charge (-1.5 e) on ligand! *** INFO: Setting num_generations: 10000 autodock4: ERROR: autodock4: ERROR: 819 runs requested, but only dimensioned for 256. Change "MAX_RUNS" in "constants.h". autodock4: Aborting... autodock4: Unsuccessful Completion. </stderr_txt> ]]> |
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mclaver
Veteran Cruncher Joined: Dec 19, 2005 Post Count: 566 Status: Offline Project Badges:
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Sorry about that, I should of looked at when it was sent. Not sure why that machine had such an old work unit still lying around. It is one of my Quads and it usually is only a couple of days behind.
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hi
I've got an error today and the strange thing is that error occured after 6 hours of crunching, not at the beginning. HFCC_ t1_ 00057673_ TrkB_ 0002_ 0-- Error 09.3.24 11:22:15 09.3.25 11:46:04 6.34 49.9 / 0.0 System is P4 with HT enabled, WinXP, Boinc version 6.2.19. Result Log: <core_client_version>6.2.19</core_client_version> <![CDATA[ <message> The system cannot find the path specified. (0x3) - exit code 3 (0x3) </message> <stderr_txt> Failed to get VersionInfo size: 1812 INFO:[14:48:04] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[14:48:54] End AutoGrid... Beginning AutoDock... INFO: Setting num_generations: 10000 About to enter main loop...(dockings already completed: 0) _maxGenSeenSoFar changed: 2500 _maxGenSeenSoFar changed: 2626 _maxGenSeenSoFar changed: 2758 _maxGenSeenSoFar changed: 2896 _maxGenSeenSoFar changed: 3041 _maxGenSeenSoFar changed: 3194 _maxGenSeenSoFar changed: 3354 _maxGenSeenSoFar changed: 3522 _maxGenSeenSoFar changed: 3699 _maxGenSeenSoFar changed: 3885 _maxGenSeenSoFar changed: 4080 _maxGenSeenSoFar changed: 4285 _maxGenSeenSoFar changed: 4500 _maxGenSeenSoFar changed: 4726 _maxGenSeenSoFar changed: 4963 _maxGenSeenSoFar changed: 5212 _maxGenSeenSoFar changed: 5473 _maxGenSeenSoFar changed: 5747 _maxGenSeenSoFar changed: 6035 _maxGenSeenSoFar changed: 6337 _maxGenSeenSoFar changed: 6654 _maxGenSeenSoFar changed: 6987 _maxGenSeenSoFar changed: 7337 _maxGenSeenSoFar changed: 7704 _maxGenSeenSoFar changed: 8090 _maxGenSeenSoFar changed: 8495 _maxGenSeenSoFar changed: 8920 _maxGenSeenSoFar changed: 9367 _maxGenSeenSoFar changed: 9836 _maxGenSeenSoFar changed: 10328 Updating Best Energy for WU: 0.00 Finished Docking number 0 Finished Docking number 1 Finished Docking number 2 Updating Best Energy for WU: -5.46 Finished Docking number 3 Finished Docking number 4 Finished Docking number 5 Finished Docking number 6 Failed to get VersionInfo size: 1812 Restoring grahics. bestEnergy: -5.479100 maxGenSeen: 10328 AG Check: Found receptor.A.map Beginning AutoDock... INFO: Setting num_generations: 10000 About to enter main loop...(dockings already completed: 7) Finished Docking number 7 Finished Docking number 8 Updating Best Energy for WU: -5.48 Finished Docking number 9 Finished Docking number 10 Finished Docking number 11 Finished Docking number 12 Finished Docking number 13 Finished Docking number 14 Finished Docking number 15 Finished Docking number 16 Finished Docking number 17 Finished Docking number 18 Finished Docking number 19 Finished Docking number 20 Finished Docking number 21 </stderr_txt> ]]> |
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Sekerob
Ace Cruncher Joined: Jul 24, 2005 Post Count: 20043 Status: Offline |
Hi,
----------------------------------------on quick scan, it's a first of this code 3 (0x3) type for HFCC. Can you please also post the startup log of your client. As for P4HT, HFCC jobs have quite a burden with them so running 2 at the same time, one on a virtual core may not be the recommended way to crunch these. Also, it's suspected in places it could be caused by the antivirus software. A project reset would fetch fresh science software and an exception to not scan the BOINC data_dir. See previous discussion: http://www.worldcommunitygrid.org/forums/wcg/viewthread?thread=17413 ttyl
WCG
Please help to make the Forums an enjoyable experience for All! |
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