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uplinger
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Re: Autodock 4 Error

Hello again,

We are going to be looking into these this week. There were 56 work units of this type of error on the last report. We have completed over 54,000 valid results. So this error is rather small but will be address. We have collected all of the error logs from these work units and will be addressing the problems.

Thank you for your patience,
-Uplinger

[Mar 16, 2009 2:54:46 PM]

Former Member
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Joined: May 22, 2018
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Re: Autodock 4 Error

Hi
Thanks very much for the information Uplinger.
Hearty congratulations on this very smooth start for a new project smile

and of course for your new gold badge! biggrin

Chris.

[Mar 16, 2009 4:39:56 PM]

Former Member
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Re: Autodock 4 Error

Thanks for the update. I'm also highly impressed with the success of this project. So far I have 238 valid results and only 1 error! Congrats are definitely in order!

[Mar 16, 2009 6:04:59 PM]

darth_vader
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A galaxy far, far away...
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Re: Autodock 4 Error

I'm seeing a similar error with HFCC_00015192_TrkB_0000. My machine and 2 others that worked on this WU all saw this:

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
- exit code -1 (0xffffffff)
</message>
<stderr_txt>
Failed to get VersionInfo size: 1812
INFO:[07:26:12] Start AutoGrid...

autogrid: autogrid4: Successful Completion.
INFO:[07:26:50] End AutoGrid...
Beginning AutoDock...
INFO: Setting num_generations: 10000
autodock4: ERROR: autodock4: ERROR: 1279 runs requested, but only dimensioned for 256.
Change "MAX_RUNS" in "constants.h".
autodock4: Aborting...

autodock4: Unsuccessful Completion.

</stderr_txt>
]]>

All of my other HFCC WUs on this machine have validated successfully.

- D

[Mar 16, 2009 7:31:47 PM]

Former Member
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Re: Autodock 4 Error

I also had 2 errors of 8 WUs on a Q9350, 64bit OS, 64bit CPU. 1st was valid, then 2 errors, and the rest are valid. Running BOINC v 6.2.8 However HFCC runs fine on a Q6600, 32bit machine.

Result Log

<core_client_version>6.2.28</core_client_version>
<![CDATA[
<message>
A network adapter hardware error occurred. (0x39) - exit code 57 (0x39)
</message>
<stderr_txt>
Failed to get VersionInfo size: 2
INFO:[05:16:22] Start AutoGrid...
ERROR: Unknown ligand atom type Si
add parameters for it to the parameter library first!
autogrid failed. rc = 57. Exiting
called boinc_finish

</stderr_txt>
]]>

[Mar 17, 2009 11:16:11 AM]

Former Member
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Re: Autodock 4 Error

autodock4: ERROR: autodock4: ERROR: 1279 runs requested, but only dimensioned for 256.

Tiny little programming error? confused

Got also quite a lot of these!

----------------------------------------
[Edit 1 times, last edit by Former Member at Mar 17, 2009 11:49:02 AM]

[Mar 17, 2009 11:48:00 AM]

Former Member
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Re: Autodock 4 Error

This one is going nowhere:

Workunit Status

Project Name: Help Fight Childhood Cancer
Created: 15-3-09
Name: HFCC_00017775_TrkB_0000
Minimum Quorum: 1
Replication: 1

Result Name Status Sent Time Time Due /
Return Time CPU Time (hours) Claimed/ Granted BOINC Credit
HFCC_ 00017775_ TrkB_ 0000_ 4-- Error 16-3-09 16:31:47 17-3-09 05:05:41 0.01 0.1 / 0.0
HFCC_ 00017775_ TrkB_ 0000_ 3-- Error 16-3-09 05:37:40 16-3-09 16:28:53 0.01 0.1 / 0.0
HFCC_ 00017775_ TrkB_ 0000_ 2-- Error 15-3-09 19:28:26 16-3-09 05:33:37 0.01 0.1 / 0.0
HFCC_ 00017775_ TrkB_ 0000_ 1-- Error 15-3-09 06:43:08 15-3-09 19:16:08 0.01 0.1 / 0.0
HFCC_ 00017775_ TrkB_ 0000_ 0-- Error 15-3-09 04:07:46 15-3-09 06:39:27 0.00 0.1 / 0.0

Result Log

<core_client_version>6.2.28</core_client_version>
<![CDATA[
<message>
- exit code -1 (0xffffffff)
</message>
<stderr_txt>
Failed to get VersionInfo size: 1812
INFO:[06:04:09] Start AutoGrid...

autogrid: autogrid4: Successful Completion.
INFO:[06:04:32] End AutoGrid...
Beginning AutoDock...
INFO: Setting num_generations: 10000
autodock4: ERROR: autodock4: ERROR: 373 runs requested, but only dimensioned for 256.
Change "MAX_RUNS" in "constants.h".
autodock4: Aborting...

autodock4: Unsuccessful Completion.

</stderr_txt>
]]>

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[Mar 17, 2009 1:31:38 PM]

uplinger
Former World Community Grid Tech
Joined: May 23, 2005
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Re: Autodock 4 Error

Greetings all,

I am currently working on fixing the bug that caused the error of MAX_RUNS being hit. This was an error on my end and I am currently working on fixing it so that future work units don't encounter this issue. As well as fixing the work units with this problem so that we can complete batches for the researchers.

-Uplinger

[Mar 17, 2009 2:40:47 PM]

coolstream
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10 year badge for Help Cure Muscular Dystrophy - Phase 2

2 year badge for Drug Search for Leishmaniasis

5 year badge for GO Fight Against Malaria

100 year badge for Mapping Cancer Markers

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10 year badge for Outsmart Ebola Together

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Re: Autodock 4 Error

Thanks for the update.

Probably no need for further reports on this, but here's mine anyway:

HFCC_ t1_ 00002770_ TrkB_ 0000_ 0--
Result Log

<core_client_version>6.2.28</core_client_version>
<![CDATA[
<message>
- exit code -1 (0xffffffff)
</message>
<stderr_txt>
Failed to get VersionInfo size: 1812
INFO:[11:29:20] Start AutoGrid...

autogrid: autogrid4: Successful Completion.
INFO:[11:29:42] End AutoGrid...
Beginning AutoDock...
INFO: Setting num_generations: 10000
autodock4: ERROR: autodock4: ERROR: 418 runs requested, but only dimensioned for 256.
Change "MAX_RUNS" in "constants.h".
autodock4: Aborting...

autodock4: Unsuccessful Completion.

</stderr_txt>
]]>

----------------------------------------

Crunching in memory of my Mum PEGGY, cousin ROPPA and Aunt AUDREY.

[Mar 17, 2009 2:51:30 PM]

ALAIN_13013
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Re: Autodock 4 Error

I have also an error on WU, but any trace of error in the result.

HFCC_ 00026223_ TrkB_ 0002_ 0-- HP-Alain Erreur 15/03/09 17:29:09 17/03/09 16:17:14 5,06 55,7 / 0,0

Journal des résultats
<core_client_version>6.2.12</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
INFO:[01:59:01] Start AutoGrid...

autogrid: autogrid4: Successful Completion.
INFO:[01:59:34] End AutoGrid...
Beginning AutoDock...
INFO: Setting num_generations: 10000
About to enter main loop...(dockings already completed: 0)
_maxGenSeenSoFar changed: 2500
_maxGenSeenSoFar changed: 2626
_maxGenSeenSoFar changed: 2758
_maxGenSeenSoFar changed: 2896
_maxGenSeenSoFar changed: 3041
_maxGenSeenSoFar changed: 3194
_maxGenSeenSoFar changed: 3354
_maxGenSeenSoFar changed: 3522
_maxGenSeenSoFar changed: 3699
_maxGenSeenSoFar changed: 3885
_maxGenSeenSoFar changed: 4080
_maxGenSeenSoFar changed: 4285
_maxGenSeenSoFar changed: 4500
_maxGenSeenSoFar changed: 4726
_maxGenSeenSoFar changed: 4963
_maxGenSeenSoFar changed: 5212
_maxGenSeenSoFar changed: 5473
_maxGenSeenSoFar changed: 5747
_maxGenSeenSoFar changed: 6035
_maxGenSeenSoFar changed: 6337
_maxGenSeenSoFar changed: 6654
_maxGenSeenSoFar changed: 6987
_maxGenSeenSoFar changed: 7337
_maxGenSeenSoFar changed: 7704
_maxGenSeenSoFar changed: 8090
_maxGenSeenSoFar changed: 8495
_maxGenSeenSoFar changed: 8920
_maxGenSeenSoFar changed: 9367
_maxGenSeenSoFar changed: 9836
_maxGenSeenSoFar changed: 10328
Updating Best Energy for WU: 0.00
Finished Docking number 0
Updating Best Energy for WU: -7.12
Finished Docking number 1
Finished Docking number 2
Finished Docking number 3
Finished Docking number 4
Finished Docking number 5
Finished Docking number 6
Finished Docking number 7
Finished Docking number 8
Finished Docking number 9
Finished Docking number 10
Finished Docking number 11
Finished Docking number 12
Finished Docking number 13
Finished Docking number 14
Finished Docking number 15
Finished Docking number 16
Finished Docking number 17
Finished Docking number 18
Finished Docking number 19

________________________________________________________________________________

autodock4: Successful Completion on "World Community Grid device"

________________________________________________________________________________

INFO:[10:57:32] Start AutoGrid...

autogrid: autogrid4: Successful Completion.
INFO:[10:58:36] End AutoGrid...
SIGSEGV: segmentation violation
Stack trace (11 frames):
[0x80b3d1b]
[0x811ab78]
[0xf7f8b400]
[0x810885e]
[0x8108acc]
[0x807e63a]
[0x80a4e56]
[0x80a59d1]
[0x80a6be3]
[0x811cc7a]
[0x8048131]

Exiting...

</stderr_txt>
]]>

----------------------------------------

[Mar 17, 2009 4:32:17 PM]

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