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Thread Status: Active Total posts in this thread: 30
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Dear All,
This is to announce that we have finished the analysis of all data from phase I, and that we will soon be able to proceed with the launch of phase II! We have a very good interfacing between JET and MAXDO (JET is the program predicting interaction sites and MAXDO is the docking program running on the grid) and this will let us reduce drastically the number of docking interfaces between pairs of proteins. The MAXDO code will be finalized in the next few weeks and will be delivered to WCG in say, three weeks. This does not mean that the WCG team will be able to start work on it immediately as they will have to fit in into their schedule. Once they receive the code they will communicate an approximate start date for phase II. In the meantime we shall finalize the list of proteins that will be docked in phase II and we shall run JET on our own machines to detect potential interaction sites. These detections will filter out MAXDO's input and reduce the number of docking faces crunched on the grid. I would like to thank you all for the support that you showed us in these last months and before, with your machine time. We all look forward to work together very soon!! Best regards, Alessandra |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Thanx for the update, Alessandra!
Sounds, like I will have a new batch in a forseeable time... ![]() |
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Diana G.
Master Cruncher Joined: Apr 6, 2005 Post Count: 3003 Status: Offline Project Badges:
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Awesome!!!!!!!!!!!!!!!
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Great news,
my son has a missense point mutation in exon 14 (nucleotide 1616 changes G->A mutation R539Q) and it seems to be the only one to have such a mutation. The RNA seems to be complete and the protein is produced but it seems that for this kind of mutation it is unstable or unfunctional, infact in the muscular tissue it is not present. I hope that this project could help us. fabama & DANIELE |
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Morris-83
Cruncher Joined: Apr 18, 2007 Post Count: 21 Status: Offline |
Ok, good news.
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mreuter80
Advanced Cruncher Joined: Oct 2, 2006 Post Count: 83 Status: Offline Project Badges:
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Thanks for the update.
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boulmontjj
Senior Cruncher France Joined: Nov 17, 2004 Post Count: 317 Status: Offline Project Badges:
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En français :
----------------------------------------Très bonne nouvelle Alessandra car nombreux sont ceux qui attendaient avec impatience la reprise de ce projet. Souhaitons que les proverbes "qui va doucement va loin" ou "plus c'est long, plus c'est bon" s'appliqueront à ce projet et qu'il en découlera des avancées significatives et des découvertes qui guériront de nombreux malades dans l'espoir. In english : Very good new Alessandra because numerous are the ones who looked forward to the resumption of this project. Let us wish that the proverbs " who goes slowly go far " or " the more it is long, the more it is good " will apply to this project and that it will ensue from it significant headways and discoveries which will cure numerous patients in the hope. |
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Zanth
Advanced Cruncher USA Joined: Aug 18, 2008 Post Count: 88 Status: Offline Project Badges:
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Tres bien!
----------------------------------------I am very much looking forward to this starting, and will be devoting about 7 days worth of CPU time to this project each and every day. :) ![]() |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Thanks for the update
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KerSamson
Master Cruncher Switzerland Joined: Jan 29, 2007 Post Count: 1684 Status: Offline Project Badges:
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Chère Alessandra,
----------------------------------------Merci pour cet update et surtout pour ces nouvelles encourageantes. Nous avons tous conscience de la complexité du travail nécessaire à la préparation d'une nouvelle phase de calcul et beaucoup d'entre nous ont eu des pensées plus que positives durant ces derniers mois pour votre équipe. Avec un peu de chance, le lancement de cette nouvelle phase pourra être synchrone avec le Téléthon en francophonie européenne Bonne chance pour la suite et à très bientôt, Yves --- Dear Alessandra, Thank you very much for this update and for the encouraging news. We all are aware about the complexity of the work requested for the preparation of e new computation phase and many of us have devoted your team a lot of positive thoughts during the last months. With a little bit luck, the launch of the new phase would occur at the same time as the european french speaking Téléthon We wish you a good luck for completing the work ! Seeing forwards for reading you very soon, Yves |
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