Not knowing anything about the functionality of this software, I posted this thread on the UD Windows client forum and now I wish to post it here because the problem is apparently part of the science application:

http://www.worldcommunitygrid.org/forums/wcg/viewthread?thread=6294

The problem, as stated in the above thread, is that I am losing work that should have been saved to disk when it is closed down, so that the project comes back to roughly the same point when the project is restarted. I think the best time to save data is when the project is put into sleep mode. I use sleep mode, for example, to ensure a clean shutdown of the project when I an shutting down Windows - a minimalist approach not knowing anything about the software.

When I restart WCG I invariably get back the percentage completion I started out with in the previous session (unless I have a long run at it) and this is counterproductive. I don't think it has anything to do with how the completion percentage is computed, either.

I like the WCG graphic and for reasons that have nothing to do with the projects per se, I sometimes run both BOINC and WCG at the same time, so I don't think I want to run Autodock anymore until it is fixed (if that's where the problem is). Apparently Rosetta does not have this problem. If it sounds like I'm talking out of my hat, I am. But I still have the problem.

BZAG.