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  Thread: [Error] ATOM syntax incorrect: "62 " is not a valid atom number

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NixChix
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
This has gone on for 3 weeks now. Why haven't the defective Wus been pulled yet?

Cheers coffee
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[Jun 7, 2023 4:47:37 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Sgt.Joe
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
Only 5 so far today, and 25 yesterday.Maybe we are running out of this batch.
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Sgt. Joe
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[Edit 1 times, last edit by Sgt.Joe at Jun 7, 2023 2:33:42 PM]
[Jun 7, 2023 2:33:11 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Crystal Pellet
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
I switched one laptop from Windows 10 (running DENIS@home) back to Linux running from a USB-stick to get some SCC1's, cause SCC is running terrific on Linux. First I got 2 tasks from batch 4089 and 4099. Then 1 of 4176 crashing immediately and 2 minutes later another 4176 going down the drain too. Those 4 tasks were all quorum 1.
2 errors and my machine got irreliable, I think, from now on getting only quorum 2, however also 2 4176-tasks that were quorum 1 again. Those I could abort before starting. I've to create some cache buffer to intercept the ATOM 62's to make my machine reliable again.
[Jun 7, 2023 5:24:22 PM]   Link   Report threatening or abusive post: please login first  Go to top 
sptrog1
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
I received 5 more 4176 C tasks today. Hopefully they are running out.
[Jun 7, 2023 11:19:40 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
While we're halfway(*1) faulty batch 0004176, I just noticed that Replication has been set to 0 for all type C workunits from that batch, e.g.:

workunit 311933876
App: Smash Childhood Cancer
Workunit: SCC1_0004176_MyoD1-C_0893
Created: 2023-05-28T07:06:09
Quorum: 2
Replication: 0

SCC1_0004176_MyoD1-C_0893_0  Linuxmint     Error     2023-06-01T21:35:04  2023-06-01T21:38:12
SCC1_0004176_MyoD1-C_0893_1  Linux Ubuntu  No Reply  2023-06-01T21:35:14  2023-06-07T21:35:14
SCC1_0004176_MyoD1-C_0893_2  Linux Debian  Error     2023-06-01T21:38:17  2023-06-02T06:19:28
SCC1_0004176_MyoD1-C_0893_3  Fedora Linux  Error     2023-06-02T11:00:53  2023-06-02T11:03:15
SCC1_0004176_MyoD1-C_0893_4  Linux Debian  Error     2023-06-02T11:03:49  2023-06-03T17:14:59

And a recent one:
workunit 314246927
App: Smash Childhood Cancer
Workunit: SCC1_0004176_MyoD1-C_49178
Created: 2023-05-31T22:19:24
Quorum: 1
Replication: 0

SCC1_0004176_MyoD1-C_49178_0  Fedora Linux  In Progress  2023-06-08T14:03:37  2023-06-14T14:03:37

This hasn't happened yet to batch 0004174 (also type C):
workunit 318804187
App: Smash Childhood Cancer
Workunit: SCC1_0004174_MyoD1-C_16902
Created: 2023-06-08T11:37:39
Quorum: 1
Replication: 1

SCC1_0004174_MyoD1-C_16902_0    Waiting to be sent

[*1] Each batch runs from sequence 0 to 99,999.

Adri
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[Edit 3 times, last edit by adriverhoef at Jun 8, 2023 2:47:37 PM]
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Sgt.Joe
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
From what I see of the progress through the batch it will be at least about 10 to 12 more days of this batch before it is through. That is if it continues at the current pace and if the sequence it follows it strictly sequential. But I could be entirely mistaken. Time will tell.
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Sgt. Joe
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[Jun 8, 2023 3:32:31 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Hans Sveen
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
Adri, I just got this one,

SCC1_0004165_MyoD1-C_0467
same error as 4175/4176 batch!
[Jun 9, 2023 5:04:39 AM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
Indeed, Hans, while we're still ploughing through batch 0004176, there are other batches of type C waiting to get crunched and apparently batch 0004165 also crashes immediately.

This was my first one this morning:
workunit 314552778
App: Smash Childhood Cancer
Workunit: SCC1_0004165_MyoD1-C_0153
Created: 2023-06-01T09:44:55
Quorum: 2
Replication: 2

SCC1_0004165_MyoD1-C_0153_0  Linux GNOME   Error                 2023-06-09T01:53:14  2023-06-09T03:22:39
SCC1_0004165_MyoD1-C_0153_1  Linuxmint     In Progress           2023-06-09T01:53:28  2023-06-15T01:53:28
SCC1_0004165_MyoD1-C_0153_2  Fedora Linux  Error                 2023-06-09T03:22:53  2023-06-09T03:25:00
SCC1_0004165_MyoD1-C_0153_3  Linux Ubuntu  Error                 2023-06-09T03:25:12  2023-06-09T07:40:53
SCC1_0004165_MyoD1-C_0153_4  Linux Arch    In Progress           2023-06-09T07:41:05  2023-06-12T07:41:05
Details: ---------------------------------------------------------------------------------------------------------------------------------------
SCC1_0004165_MyoD1-C_0153_2  Fedora Linux  Error                 2023-06-09T03:22:53  2023-06-09T03:25:00
	Logfile:
	<core_client_version>7.20.2</core_client_version>
	<message>
	process exited with code 1 (0x1, -255)</message>
	<stderr_txt>
	INFO: result number = 2
	INFO: No state to restore.  Start from the beginning.
	[05:23:01] Number of tasks = 1
	[05:23:01] Running task 0,CPU time at start of task 0 was 0.000000
	[05:23:01] ./cmpd-0000154.pdbqt size = 32 7 ../../projects/www.worldcommunitygrid.org/scc1.MyoD1-C.pdbqt size = 1268 0
	
	
	Parse error on line 190 in file "../../projects/www.worldcommunitygrid.org/27295592b17b5fe8860fb8af4612becf.pdbqt": ATOM syntax incorrect: "62 " is not a valid atom number
	VINA failed.  rc = 1.  Exiting
	
	</stderr_txt>


Followed by:
workunit 314612178
SCC1_0004165_MyoD1-C_0629_0  Linux Ubuntu  Server Aborted        2023-06-09T04:01:39  2023-06-09T06:45:06
SCC1_0004165_MyoD1-C_0629_1  Linux Ubuntu  Error                 2023-06-09T04:01:50  2023-06-09T04:07:52
SCC1_0004165_MyoD1-C_0629_2  Arch Linux    Error                 2023-06-09T04:07:58  2023-06-09T04:59:08
SCC1_0004165_MyoD1-C_0629_3  Linuxmint     Error                 2023-06-09T04:59:32  2023-06-09T05:01:39
SCC1_0004165_MyoD1-C_0629_4  Fedora Linux  Error                 2023-06-09T05:01:46  2023-06-09T05:03:53

workunit 314650293
SCC1_0004165_MyoD1-C_1008_0  Linux Ubuntu  In Progress           2023-06-09T05:52:42  2023-06-15T05:52:42
SCC1_0004165_MyoD1-C_1008_1  Linux Debian  Error                 2023-06-09T05:52:47  2023-06-09T05:55:03
SCC1_0004165_MyoD1-C_1008_2  Fedora Linux  Error                 2023-06-09T05:56:43  2023-06-09T05:58:49
SCC1_0004165_MyoD1-C_1008_3  Linux Debian  In Progress           2023-06-09T05:59:00  2023-06-12T05:59:00

workunit 314706662
SCC1_0004165_MyoD1-C_1451_0  Linux openSU  In Progress           2023-06-09T08:24:26  2023-06-15T08:24:26
SCC1_0004165_MyoD1-C_1451_1  Linux Ubuntu  Error                 2023-06-09T08:24:30  2023-06-09T08:26:39
SCC1_0004165_MyoD1-C_1451_2  Fedora Linux  Error                 2023-06-09T08:27:08  2023-06-09T08:29:16
SCC1_0004165_MyoD1-C_1451_3  Linuxmint     In Progress           2023-06-09T08:29:32  2023-06-12T08:29:32

Adri
[Jun 9, 2023 8:46:24 AM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
Nice to see that somebody else (see task _3 below) also (probably automatically(*1) (see post 686915)) aborts incoming tasks from the 'new' faulty batch 0004174:

workunit 314654777
SCC1_0004174_MyoD1-C_0092_0  Fedora Linux  U.Aborted  2023-06-09T06:26:19  2023-06-09T08:50:47
SCC1_0004174_MyoD1-C_0092_1  Linux Debian  Error      2023-06-09T06:26:24  2023-06-09T06:28:31
SCC1_0004174_MyoD1-C_0092_2  AlmaLinux     Error      2023-06-09T06:28:56  2023-06-09T09:51:13
SCC1_0004174_MyoD1-C_0092_3  Linux Ubuntu  U.Aborted  2023-06-09T08:51:15  2023-06-09T08:53:20
SCC1_0004174_MyoD1-C_0092_4  Linux Debian  S.Aborted  2023-06-09T08:53:32  2023-06-09T09:58:21

[*1] Aborting them automatically will prevent your host from getting unreliable and sending out more copies of the same task to other clients once Replication has been set to 0. In the end, it also prevents sending out more tasks needing verification. Of course, as soon as the error has been fixed on the server and all faulty tasks have vanished, you can/should stop looking for these faulty tasks. Guarding against aborting the wrong tasks has been defined by looking for the 'signature' that concerns the 'faulty' batches (again, see post 686915).

Adri
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[Edit 4 times, last edit by adriverhoef at Jun 9, 2023 4:23:15 PM]
[Jun 9, 2023 10:43:53 AM]   Link   Report threatening or abusive post: please login first  Go to top 
TPCBF
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Re: [Error] ATOM syntax incorrect: "62 " is not a valid atom number
Oh well, what do you know? Just in time for the weekend, yet another faulty batch (after 4175 and 4176, it's now 4174)...

And still crickets from WCG Towers... sad

Ralf
[Jun 9, 2023 2:29:01 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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