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  Thread: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread

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Grumpy Swede
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
Strange, on all my (not that many) computers, NFCV is much faster than LOO. That goes for both the regular MCM WU's and this BETA run.

Computers:

1. Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz, Mem: 16GB Windows 8.1
2. Intel(R) Core(TM) i7-3630QM CPU @ 2.40GHz Mem: 8GB Windows 8.1
3. Intel(R) Core(TM) i3-M380 CPU @ 2.53GHz Mem: 4GB Windows 7.
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[Edit 2 times, last edit by Grumpy Swede at Oct 8, 2020 2:19:10 PM]
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Sgt.Joe
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
Now i am seing on my Linux machines some betas with 173 mb both virtual and working set and some with 190 mb both virtual and working set for memory.
The short ones are about 2 hours and the long ones are 3.1 to 3.2 hours on an I7 2600K at stock.

Edit:Changed time on longer running units. The estimates were for 5 to 6 hours, but they finished quicker than the estimates.

Cheers
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Sgt. Joe
*Minnesota Crunchers*
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[Edit 2 times, last edit by Sgt.Joe at Oct 8, 2020 6:03:53 PM]
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BQL_FFM
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread


I hope that ARM version is released to production - I was worried about this when the previous Beta (July) ended with no published conclusion!

Cheers - Al.


+1 biggrin

Hope so, too. Raspberry PIs are going through. Model 2B, 3B and 4B. 4B seems to be tree times faster than the 2B. I will update the incoming results.

Result Name Device Name Status CPU Time / Elapsed Time (hours) Claimed/ Granted BOINC Credit
BETA_MCM1_9890289_3450_1 3B-03 Valid 18.41 / 18.47 88.8 / 124.0
BETA_MCM1_9890291_2031_0 3B-01 Valid 18.49 / 18.53 173.6 / 142.8
BETA_MCM1_9890292_1761_0 4B-2GB-02 Valid 4.15 / 4.15 73.0 / 69.5
BETA_MCM1_9890292_4801_0 4B-2GB-02 Valid 4.13 / 4.13 72.6 / 70.6
BETA_MCM1_9890293_0379_0 4B-4GB-01 Valid 6.11 / 6.12 107.9 / 106.6
BETA_MCM1_9890293_2636_0 4B-2GB-01 Valid 6.30 / 6.31 43.8 / 75.0
BETA_MCM1_9890293_4918_1 4B-4GB-01 Pending Validation 6.09 / 6.10 107.5 / 0.0
BETA_MCM1_9890293_6458_0 4B-4GB-01 Pending Validation 6.32 / 6.33 111.5 / 0.0
BETA_MCM1_9890293_7628_0 2B-01 Valid 25.42 / 25.49 135.7 / 119.9
BETA_MCM1_9890294_0986_1 2B-01 Valid 10.85 / 10.88 57.9 / 60.9
BETA_MCM1_9890294_3902_1 4B-4GB-01 Valid 2.97 / 2.98 52.4 / 50.8
BETA_MCM1_9890294_8247_0 4B-2GB-01 Valid 3.00 / 3.00 20.8 / 41.0

Cheers
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[Edit 4 times, last edit by BQL_FFM at Oct 9, 2020 2:32:44 PM]
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Klaus-Dieter Vossberg
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
Got 57 WUs, all are either valid or pending validation this morning, they run on Win10 and Android machines.

One machine shows low credits for some results while run time is quite similar to the ones with higher credits. Here please see all results of this machine:

BETA_MCM1_9890291_6721_2 LAPTOP-0GAITBQ3 Valid 10/8/20 06:33:59 10/8/20 17:01:44 10.39 / 10.45 109.1 / 90.0
BETA_MCM1_9890289_3199_1 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:00:53 8.02 / 8.13 286.0 / 193.9
BETA_MCM1_9890289_5948_0 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:19:31 8.37 / 8.48 109.8 / 104.1
BETA_MCM1_9890289_4200_1 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:00:53 8.04 / 8.16 286.8 / 194.7
BETA_MCM1_9890289_3276_0 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:00:53 8.05 / 8.16 286.9 / 191.3
BETA_MCM1_9890289_3306_1 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:05:01 8.11 / 8.21 106.5 / 86.7
BETA_MCM1_9890289_4771_1 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:02:57 8.07 / 8.18 287.6 / 197.9
BETA_MCM1_9890289_3314_1 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/8/20 00:09:08 8.19 / 8.30 107.4 / 94.8
BETA_MCM1_9890289_3244_0 LAPTOP-0GAITBQ3 Valid 10/7/20 15:50:03 10/7/20 23:58:48 8.02 / 8.13 285.9 / 195.7

If you need more details for clarification just let me know.

All the best

Klaus
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mdxi
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
My RPi runtimes look like this:

----------------------------------------------------------------------- nodepi01
WUs matching 'BETA' for World Community Grid in past 168 hours: 3
Total CPU time used:  14h 38min 43s
        Min runtime: 02h 37min 18s
        Max runtime: 06h 01min 46s
        Avg runtime: 04h 52min 54s
----------------------------------------------------------------------- nodepi02
WUs matching 'BETA' for World Community Grid in past 168 hours: 3
Total CPU time used:  10h 02min 58s
        Min runtime: 02h 38min 29s
        Max runtime: 04h 45min 09s
        Avg runtime: 03h 20min 59s
----------------------------------------------------------------------- nodepi03
WUs matching 'BETA' for World Community Grid in past 168 hours: 3
Total CPU time used:  14h 33min 56s
        Min runtime: 03h 55min 57s
        Max runtime: 05h 57min 54s
        Avg runtime: 04h 51min 18s
----------------------------------------------------------------------- nodepi04
WUs matching 'BETA' for World Community Grid in past 168 hours: 3
Total CPU time used:  10h 34min 46s
        Min runtime: 02h 46min 10s
        Max runtime: 04h 48min 57s
        Avg runtime: 03h 31min 35s

Which is 1.5x to 2X the times as on my fastest x86 nodes. Of course, I don't know if the work in the ARM and x86 WUs was equivalent.
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
Had 8 which ran 2 concurrent each and took from 3:55 to 4:24 hours, a reasonable spread. Credit per hour varied for last two 22 and 27 respectively. These 2 took both 3.7 CPU hours. Oh well.
[Oct 9, 2020 10:31:20 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Corla99 [Lombardia]
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
Got 80 wu on 7 different pc

So...
Ubuntu 20.04 w/ Intel xeon (official Docker container) -> 6 ok
Ubuntu 20.04 w/ Amd ryzen (official Docker container) -> 40 ok
Win 10 Pro 1909 w/ Amd ryzen -> 24 ok
OpenMediaVault 5.5.11-1 w/ Intel celeron (official Docker container) -> 3 ok
UnRaid 6.8.3 w/ Amd ryzen (official Docker container) -> 2 ok

Raspbian 10 w/ Raspberry Pi 3B+ (official Docker container) -> 1 error
Raspbian 10 w/ Raspberry Pi 4B (official Docker container) -> 4 ok

On the Raspberry Pi 3B+ there are only OPN1 and WuProp wu running
-------------------------------------------------------------------------------------------------------------------------------

Wu name: BETA_ MCM1_ 9890293_ 0255_ 1
Stderr of the wu in error:
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)</message>
<stderr_txt>
Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_beta17_map_7.57_arm-unknown-linux-gnueabihf -SettingsFile MCM1_9890293_0255.txt -DatabaseFile dataset-sarc1.txt
Settings File
DateOfDesign = 20200218
Designer = Krembil/cubes
WorkOrderID = MCM1_9890293_0255--was--0160328_0255
DatasetID = sarc1
RSeed = 256
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 12071
RunPermutationAlgorithm = 0
FitnessFn = 0
NumberOfGenesInStartingSignature = 20
NumberOfGenesInSignatureMin = 20
NumberOfGenesInSignatureMax = 20
SearchAlgorithmNumberToCreate = 34506
PositiveClasses = 5 6
MinFitness = 0.785
VMethod = LOO
SvmArgs = "-v 0 -t 0 -c 1"
SvmLearnLimit = 250000



terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
SIGABRT: abort called
Stack trace (2 frames):
[0x864a8]
[0x149d50]

Exiting...

</stderr_txt>
]]>

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Bruta
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
Raspberry Pi 2 kernel 5.4.51-v7+

464: ../../projects/www.worldcommunitygrid.org/wcgrid_beta17_map_7.57_arm-unknown-linux-gnueabihf -SettingsFile MCM1_9890292_5380.txt -DatabaseFile dataset-17_72_SDG_v1.txt
00010000 2008K r-x-- wcgrid_beta17_map_7.57_arm-unknown-linux-gnueabihf
00216000 24K rw--- wcgrid_beta17_map_7.57_arm-unknown-linux-gnueabihf
0021c000 188K rw--- [ anon ]
01e4e000 35908K rw--- [ anon ]
71090000 31952K rw--- [ anon ]
745e5000 41736K rw--- [ anon ]
76f08000 528K rw--- [ anon ]
76f8c000 4K rw-s- boinc_mcm1_0
76f8d000 4K ----- [ anon ]
76f8e000 32K rw--- [ anon ]
76f96000 8K rw-s- boinc_mmap_file
7e800000 132K rw--- [ stack ]
7ee92000 4K r-x-- [ anon ]
7ee93000 4K r---- [ anon ]
7ee94000 4K r-x-- [ anon ]
ffff0000 4K r-x-- [ anon ]
total 112540K
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Grumpy Swede
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
This Beta isn't finished yet :-)

I just received two _2 WU's. (resends)

BETA_MCM1_9890291_7004_2
BETA_MCM1_9890291_1474_2
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[Edit 1 times, last edit by Grumpy Swede at Oct 11, 2020 5:59:10 PM]
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Warped@RSA
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Re: Mapping Cancer Markers - Beta - Oct 7, 2020 - Issues Thread
This Beta isn't finished yet :-)

I just received two _2 WU's. (resends)

BETA_MCM1_9890291_7004_2
BETA_MCM1_9890291_1474_2

Yes, indeed.
I also received a couple of resends.
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Dave
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