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Category: Completed Research Forum: OpenZika Thread: Task erroring out |
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Thread Status: Active Total posts in this thread: 8
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adriverhoef
Master Cruncher The Netherlands Joined: Apr 3, 2009 Post Count: 2083 Status: Offline Project Badges: |
https://www.worldcommunitygrid.org/ms/device/....do?workunitId=1228441180
<core_client_version>7.9.3</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255)</message> <stderr_txt> INFO: result number = 0 INFO: No state to restore. Start from the beginning. [11:04:37] Number of tasks = 28 [11:04:37] Running task 0,CPU time at start of task 0 was 0.000000 ... SNIP 8< SNIP 8< SNIP ... [11:44:20] Finished task #12 cpu time used 209.459234 [11:44:20] Running task 13,CPU time at start of task 13 was 2378.642854 [11:44:20] ./ZINC000280365116.pdbqt size = 21 5 ../../projects/www.worldcommunitygrid.org/zika.x4v0r_DENV_NS5_s2.pdbqt size = 8853 0 Parse error on line 18 in file "./ZINC000280365116.pdbqt": ATOM syntax incorrect: "Si" is not a valid AutoDock type. Note that AutoDock atom types are case-sensitive. VINA failed. rc = 1. Exiting </stderr_txt> ]]> |
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ThreadRipper
Veteran Cruncher Sweden Joined: Apr 26, 2007 Post Count: 1319 Status: Offline Project Badges: |
I also get a bunch of these exact errors regularly.
----------------------------------------Join The International Team: https://www.worldcommunitygrid.org/team/viewTeamInfo.do?teamId=CK9RP1BKX1 AMD TR2990WX @ PBO, 64GB Quad 3200MHz 14-17-17-17-1T, RX6900XT @ Stock AMD 3800X @ PBO AMD 2700X @ 4GHz |
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hchc
Veteran Cruncher USA Joined: Aug 15, 2006 Post Count: 746 Status: Offline Project Badges: |
Can you upgrade to 7.14.2 and see if the errors recur?
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ThreadRipper
Veteran Cruncher Sweden Joined: Apr 26, 2007 Post Count: 1319 Status: Offline Project Badges: |
I use 7.14.2 and have the same problem:
----------------------------------------Result Name: ZIKA_ 000451132_ x5u04_ ZIKV_ NS5pol_ s2_ 0971_ 0-- <core_client_version>7.14.2</core_client_version> <![CDATA[ <message> Felaktig funktion. (0x1) - exit code 1 (0x1)</message> <stderr_txt> INFO: result number = 0 INFO: No state to restore. Start from the beginning. [09:56:25] Number of tasks = 31 [09:56:25] Running task 0,CPU time at start of task 0 was 0.000000 [09:56:25] ./ZINC000294832065.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [09:59:43] Finished task #0 cpu time used 197.250000 [09:59:43] Running task 1,CPU time at start of task 1 was 197.250000 [09:59:43] ./ZINC000294832068.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:03:02] Finished task #1 cpu time used 199.109375 [10:03:02] Running task 2,CPU time at start of task 2 was 396.359375 [10:03:02] ./ZINC000294832071.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:06:21] Finished task #2 cpu time used 199.171875 [10:06:21] Running task 3,CPU time at start of task 3 was 595.531250 [10:06:21] ./ZINC000294832075.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:09:43] Finished task #3 cpu time used 201.171875 [10:09:43] Running task 4,CPU time at start of task 4 was 796.703125 [10:09:43] ./ZINC000294832533.pdbqt size = 22 3 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:11:58] Finished task #4 cpu time used 135.187500 [10:11:58] Running task 5,CPU time at start of task 5 was 931.890625 [10:11:58] ./ZINC000294832540.pdbqt size = 22 3 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:14:14] Finished task #5 cpu time used 136.109375 [10:14:14] Running task 6,CPU time at start of task 6 was 1068.000000 [10:14:14] ./ZINC000294832676.pdbqt size = 20 4 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:16:36] Finished task #6 cpu time used 142.171875 [10:16:36] Running task 7,CPU time at start of task 7 was 1210.171875 [10:16:36] ./ZINC000294833006.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:19:44] Finished task #7 cpu time used 188.281250 [10:19:44] Running task 8,CPU time at start of task 8 was 1398.453125 [10:19:44] ./ZINC000294833259.pdbqt size = 22 3 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:22:02] Finished task #8 cpu time used 138.171875 [10:22:02] Running task 9,CPU time at start of task 9 was 1536.625000 [10:22:02] ./ZINC000294833529.pdbqt size = 22 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:25:15] Finished task #9 cpu time used 192.250000 [10:25:15] Running task 10,CPU time at start of task 10 was 1728.875000 [10:25:15] ./ZINC000294833535.pdbqt size = 22 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:28:24] Finished task #10 cpu time used 189.218750 [10:28:24] Running task 11,CPU time at start of task 11 was 1918.093750 [10:28:24] ./ZINC000294834320.pdbqt size = 25 7 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:32:49] Finished task #11 cpu time used 264.250000 [10:32:49] Running task 12,CPU time at start of task 12 was 2182.343750 [10:32:49] ./ZINC000294834458.pdbqt size = 18 3 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:34:30] Finished task #12 cpu time used 101.156250 [10:34:30] Running task 13,CPU time at start of task 13 was 2283.500000 [10:34:30] ./ZINC000294834467.pdbqt size = 22 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:37:30] Finished task #13 cpu time used 180.171875 [10:37:30] Running task 14,CPU time at start of task 14 was 2463.671875 [10:37:30] ./ZINC000294834473.pdbqt size = 22 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:40:29] Finished task #14 cpu time used 179.203125 [10:40:29] Running task 15,CPU time at start of task 15 was 2642.875000 [10:40:29] ./ZINC000294834629.pdbqt size = 22 4 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:43:08] Finished task #15 cpu time used 158.234375 [10:43:08] Running task 16,CPU time at start of task 16 was 2801.109375 [10:43:08] ./ZINC000294834947.pdbqt size = 23 4 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:46:02] Finished task #16 cpu time used 175.125000 [10:46:02] Running task 17,CPU time at start of task 17 was 2976.234375 [10:46:02] ./ZINC000294834949.pdbqt size = 23 4 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:48:55] Finished task #17 cpu time used 172.093750 [10:48:55] Running task 18,CPU time at start of task 18 was 3148.328125 [10:48:55] ./ZINC000294834951.pdbqt size = 23 4 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:51:47] Finished task #18 cpu time used 172.203125 [10:51:47] Running task 19,CPU time at start of task 19 was 3320.531250 [10:51:47] ./ZINC000294835002.pdbqt size = 24 8 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [10:56:51] Finished task #19 cpu time used 303.281250 [10:56:51] Running task 20,CPU time at start of task 20 was 3623.812500 [10:56:51] ./ZINC000294835011.pdbqt size = 25 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:01:07] Finished task #20 cpu time used 256.234375 [11:01:07] Running task 21,CPU time at start of task 21 was 3880.046875 [11:01:07] ./ZINC000294835012.pdbqt size = 25 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:05:22] Finished task #21 cpu time used 255.250000 [11:05:22] Running task 22,CPU time at start of task 22 was 4135.296875 [11:05:22] ./ZINC000294835945.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:08:58] Finished task #22 cpu time used 215.218750 [11:08:58] Running task 23,CPU time at start of task 23 was 4350.515625 [11:08:58] ./ZINC000294836055.pdbqt size = 25 10 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:14:33] Finished task #23 cpu time used 335.421875 [11:14:33] Running task 24,CPU time at start of task 24 was 4685.937500 [11:14:33] ./ZINC000294836059.pdbqt size = 25 10 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:20:15] Finished task #24 cpu time used 342.359375 [11:20:15] Running task 25,CPU time at start of task 25 was 5028.296875 [11:20:15] ./ZINC000294836068.pdbqt size = 23 7 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:24:01] Finished task #25 cpu time used 225.250000 [11:24:01] Running task 26,CPU time at start of task 26 was 5253.546875 [11:24:01] ./ZINC000294836115.pdbqt size = 21 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:27:14] Finished task #26 cpu time used 193.234375 [11:27:14] Running task 27,CPU time at start of task 27 was 5446.781250 [11:27:14] ./ZINC000294836118.pdbqt size = 21 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:30:27] Finished task #27 cpu time used 192.203125 [11:30:27] Running task 28,CPU time at start of task 28 was 5638.984375 [11:30:27] ./ZINC000294836380.pdbqt size = 26 6 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 [11:34:00] Finished task #28 cpu time used 214.296875 [11:34:00] Running task 29,CPU time at start of task 29 was 5853.281250 [11:34:00] ./ZINC000294836860.pdbqt size = 24 5 ../../projects/www.worldcommunitygrid.org/zika.x5u04_ZIKV_NS5pol_s2.pdbqt size = 5409 0 Parse error on line 25 in file ".\ZINC000294836860.pdbqt": ATOM syntax incorrect: "Si" is not a valid AutoDock type. Note that AutoDock atom types are case-sensitive. VINA failed. rc = 1. Exiting </stderr_txt> ]]> Join The International Team: https://www.worldcommunitygrid.org/team/viewTeamInfo.do?teamId=CK9RP1BKX1 AMD TR2990WX @ PBO, 64GB Quad 3200MHz 14-17-17-17-1T, RX6900XT @ Stock AMD 3800X @ PBO AMD 2700X @ 4GHz |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Found this wiki page with all the BOINC errors, exit status 1 suggested to be a project application error.
----------------------------------------https://boinc.mundayweb.com/wiki/index.php?title=Project_application_errors Exit code -1 (0xffffffff) seems to be an incompatibility between the science application and your video card. You'll run into it when you use the graphics or screen saver, tasks running at the time when either is activated will error out with the above error message. It's always good to report these errors on the project forums, especially when the project doesn't have graphics. Mostly found on ATI video cards. Try updating your video card drivers and if you can, the DirectX version. But the only sure workaround in case the project does have graphics is not to look at the graphics or to use the screen saver. BTW, it seems the latest MacOS is only running 64 bit graphics, when some projects graphics are 32 bit. Looking at Zika, it appears to be 64 on my Windows: bits.wcgrid_mdds_graphics_prod_64.exe.7.08 [Edit 1 times, last edit by Former Member at Oct 11, 2019 9:32:18 AM] |
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adriverhoef
Master Cruncher The Netherlands Joined: Apr 3, 2009 Post Count: 2083 Status: Offline Project Badges: |
The problem is ”ATOM syntax incorrect: "Si" is not a valid AutoDock type.”
----------------------------------------[Edit 1 times, last edit by adriverhoef at Oct 11, 2019 12:13:02 PM] |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
The problem is ”ATOM syntax incorrect: "Si" is not a valid AutoDock type.” That's what it said in a post above mine. |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
---------------------------------------- [Edit 1 times, last edit by Former Member at Feb 21, 2020 8:49:59 AM] |
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