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Former Member
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cool status update from isb/nyu



We've started writing the paper and therefore have been cranking solid for some weeks. Lars M has the database in shape and Mike riffle is churning out the integration of the structure with previously existing function annotations. Everything is looking good. therefore i need to go to bed for a week.

we've had some good feedback from biologists using the beta sites and we're working on a less technical document for everyone who chrunches / wcg peeps.
in any case I'll think the ibm people want to turn this so-called layman paper into some sort of press release and hopefully we can put a link up here.

in case you missed last weeks status report here it is again.


We’re progressing at a pretty constant rate now. With only a small fraction of the folding left and Dec-2005 right around the corner we’ve (Lars Malmstroem, Rich Bonneau, Mike Riffle :: at the UW and the ISB) been focusing on getting the results formatted for biologists. A prototype of the database is up for yeast and some other bugs and should be up for Human soon Thanks all you volunteers for cranking through so many proteins so far…. So far the average volunteer has folded 5 million protein conformations, most of which are upstairs on the disk-pack (not to mention the bazillion confs the scoring fnx has kicked out)!

cheers and thanks for crunching (we'll keep cranking on the paper to get the results out ... )

ps.
i'm off to NYU dept of bio/computer science in 5 weeks, so a lot of this stuff will continue while i'm there.
[Oct 21, 2005 1:18:42 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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Re: status update from isb/nyu

ooooo, 97%


Closing stages, time for a big push biggrin



WELL DONE EVERYBODY

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[Edit 1 times, last edit by Former Member at Oct 21, 2005 3:44:27 PM]
[Oct 21, 2005 3:44:10 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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Re: status update from isb/nyu

I`m happy!!! This is what makes it all worthwhile. People who can actually do something with this.

I hope there will be more projects like it and that many people will get involved. I am proud to have been part of it. I hope I can put online some extra boxes in the near future. These are BIG unix and linux boxes which are located inside the EC. But we`ll see about that.

Cheers.
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Former Member
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Re: status update from isb/nyu

RBonneau wrote:
we've had some good feedback from biologists using the beta sites and we're working on a less technical document for everyone who chrunches / wcg peeps.


Excellent news biggrin
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dogeye
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Re: status update from isb/nyu

It looks like this project will finish in 4 weeks (≈11/18) or slightly sooner.
Good work fellas!!
Let's finish this thing sprinting.
[Oct 22, 2005 12:45:05 AM]   Link   Report threatening or abusive post: please login first  Go to top 
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Re: status update from isb/nyu

how many extra batches do you forsee adding to the project before the new WCG project comes online?
[Oct 22, 2005 6:51:47 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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cool Re: status update from isb/nyu

not really sure, we're tring to get a few more plant genomes through the pipe and plants are very tough! they have lots of duplications and huge genomes, so just to figure out how many of the proteins we need to fold takes another week. I think 10,000-20,000 (not that many for this project).


ok, so i didn't answer you question ...
10k ... thats my best guess ...
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retsof
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Re: status update from isb/nyu

not really sure, we're tring to get a few more plant genomes through the pipe and plants are very tough! they have lots of duplications and huge genomes, so just to figure out how many of the proteins we need to fold takes another week. I think 10,000-20,000 (not that many for this project).


ok, so i didn't answer you question ...
10k ... thats my best guess ...


10/21/2005 69:157:18:04:37 15,974,300 88,690
Based on our recordbreaking effort yesterday, we can spit that extra stuff out in about three hours. <shrug>
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[Oct 22, 2005 9:06:39 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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Re: status update from isb/nyu

What a rush this has become!!!!!1
[Oct 23, 2005 12:53:35 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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Re: status update from isb/nyu

So with the project 97% of the way done and looking to finish in the next month or two, is there any word on what we'll get to start on next? Just got involved a few weeks ago with my two home computers and looking forward to more crunching!
[Oct 23, 2005 2:49:09 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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