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World Community Grid Forums
Category: Completed Research
Forum: Uncovering Genome Mysteries
Thread: Comparison algorithm |
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Thread Status: Active Total posts in this thread: 5
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lovelynepenthe
Cruncher Joined: Mar 7, 2007 Post Count: 4 Status: Offline Project Badges: 
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Which comparison algorithm is this project using? BLAST?
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Not very likely since faster algorithms are available.
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Speedy51
Veteran Cruncher New Zealand Joined: Nov 4, 2005 Post Count: 1326 Status: Offline Project Badges: 
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This question is slightly off Hope it's okay that I post it in here. A couple of days ago Saturday US time I think it was I processed a few work units and the upload size was about 1.5 meg is any compression used at all? If so I would be interested to know what the original results size is
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Viktors
Former World Community Grid Tech Joined: Sep 20, 2004 Post Count: 653 Status: Offline Project Badges: 
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They are using SSEARCH which is part of FASTA.
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Knew I'd seen it and am surprised. This Jan.15 by wdegrave mentions ssearch used for the Genome Comparison project in 2006 http://www.worldcommunitygrid.org/forums/wcg/viewpostinthread?post=473797 but not expected same was being used for UGM... as for SIMAP... "in later years redoing the calculations similar to Genome Comparison".
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