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World Community Grid Forums
Category: Beta Testing
Forum: Beta Test Support Forum
Thread: Mapping Cancer Markers Beta Test - Version 7.28 [ Issues Thread ] |
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Thread Status: Active Total posts in this thread: 49
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Sgt.Joe
Ace Cruncher USA Joined: Jul 4, 2006 Post Count: 7777 Status: Offline Project Badges: 
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Personally, hope the techs take the time to move 7.28 to production, even this weekend. Probably they caught by far the biggest portion of the invalid problem, so what is produced after upgrade will have a whole lot less concern and wasted time, possibly years and it still would be under 5% fail rate [but on 250 years production per day that's a bunch of extra replication. More [low frequency] bugs can be fixed in a later release, with less time-pressure. I agree. So far all the 7.28 for me are valid, even multiple restarts. Cheers
Sgt. Joe
*Minnesota Crunchers* |
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mikefinn
Cruncher USA Joined: Apr 27, 2007 Post Count: 43 Status: Offline Project Badges: 
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I was able to restart every beta work unit I was given. None of them went into Pending Verification or Invalid status. However, none of the wingmen who ran these work units with me did a restart of their units; they all ran straight through. I would liked to have seen a quorum of two restarted work units validating each other.
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[VENETO] boboviz
Senior Cruncher Joined: Aug 17, 2008 Post Count: 183 Status: Offline Project Badges: 
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My 7.26 wus is crunched in 4 to 5 hs. This 7.28 in 14 h. Is this normal??
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
The different batches and even within batches there is a wide variety of runtimes. The techs would like to, but may not be able to find a pattern to size tasks to computing weight... non-deterministic calculations, wherever the mapping matches lead on a cancer structure. Already I've seen output files going from 40KB to 1.3MB on one system. The System Requirements page indicates, the mapping files can grow to 3MB. At any rate, now got one of batch 216 that has been running for 36 hours, still making progress, and not worried with the new 7.28 resolution of the restart problem
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
P.S. We're computing batches with 7.28 that have already passed production with 7.26. They will be compared in every which way possible, not anticipating any performance change. The issue was strictly to fit the pre-restart piece of the job to the post-restart of the job together properly so that quorum comparisons do not lead to failure over wrong concatenation due to failing 'resume bits'.
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uplinger
Former World Community Grid Tech Joined: May 23, 2005 Post Count: 3952 Status: Offline Project Badges: 
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Greetings everyone,
As Sek mentioned that with this latest version the invalids have dropped by over 99%. The last beta test had thousands of invalids where this version with 75% of the results returned has only 15 invalids. This will help reduce the number of resends required for mcm1 increasing the productivity of the grid. I will be releasing this version to production shortly. Thanks, -Uplinger |
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yoro42
Ace Cruncher United States Joined: Feb 19, 2011 Post Count: 8979 Status: Offline Project Badges:
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Of the 46 WUs this is the only one that ended with status of Error:
----------------------------------------BETA_ MCM1_ 0000216_ 9230_ 1-- 728 Error 12/13/13 07:48:38 12/14/13 03:37:11 11.29 391.9 / 391.9 Result Log Result Name: BETA_ MCM1_ 0000216_ 9230_ 1-- <core_client_version>7.2.33</core_client_version> <![CDATA[ <stderr_txt> Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.28_windows_x86_64 -SettingsFile MCM1_0000216_9230.txt -DatabaseFile dataset-17_72_SDG_v1.txt Settings File DateOfDesign = 11/08/2013 Designer = PMCC_OCI WorkOrderID = 0000216_9230 DatasetID = 17_72_SDG_v1 NumberOfGenesInStartingSignature = 20 NumberOfGenesInSignatureMin = 10 NumberOfGenesInSignatureMax = 20 GroupVectorValues = {A}{B}{C}{D}{E}{F} ExplicitStartingGeneSignatures = A B D F StartingGeneSignatureAlgorithm = randomFixedLengthSearch SearchAlgorithmNumberToCreate = 1 SearchAlgorithmSequentialStartPosition = 5 RunPermutationAlgorithm = 1 PermutationGroups = A PermutationGroupsForReplacement = G PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy PermutationsNumIterations = 67911 OptimizationAlgorithmFrequency = 0 0 1 FBeta = 1.5 SimAnnealIMax = 20000 SimAnnealAlpha = 0.9996 NReps = 10 TrainFrac = 0.7 NFolds = 10 VMethod = LOO ModelType = SVM FitnessFn = 0 MinFitness = 0.61 SvmArgs = "-v 0 -c 0.1 -t 1 -d 2 -r 0" SvmLearnLimit = 500000 RSeed = 519230 [06:10:06] Initializing [06:10:13] Running [06:10:13] EvaluateFitnessOfStartingGeneSignatures 1 [06:10:14]: Computing pass 0 Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.28_windows_x86_64 -SettingsFile MCM1_0000216_9230.txt -DatabaseFile dataset-17_72_SDG_v1.txt [06:21:33] Initializing [06:21:40] Running [06:21:40] EvaluateFitnessOfStartingGeneSignatures 1 [06:21:41]: Computing pass 0 Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.28_windows_x86_64 -SettingsFile MCM1_0000216_9230.txt -DatabaseFile dataset-17_72_SDG_v1.txt [10:44:55] Initializing [10:45:02] Running [10:45:02] EvaluateFitnessOfStartingGeneSignatures 1 [10:45:02]: Computing pass 0 Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.28_windows_x86_64 -SettingsFile MCM1_0000216_9230.txt -DatabaseFile dataset-17_72_SDG_v1.txt [10:57:45] Initializing [10:57:56] Running [10:57:56] EvaluateFitnessOfStartingGeneSignatures 1 [10:57:57]: Computing pass 0 Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.28_windows_x86_64 -SettingsFile MCM1_0000216_9230.txt -DatabaseFile dataset-17_72_SDG_v1.txt [11:44:46] Initializing [11:44:54] Running [11:44:54] EvaluateFitnessOfStartingGeneSignatures 1 [11:44:54]: Computing pass 0 Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.28_windows_x86_64 -SettingsFile MCM1_0000216_9230.txt -DatabaseFile dataset-17_72_SDG_v1.txt [18:22:31] Initializing [18:22:38] Running [18:22:38] EvaluateFitnessOfStartingGeneSignatures 1 [18:22:38]: Computing pass 0 [20:35:29] Exiting PermutateGeneSignature [20:35:29] Writing final output [20:35:29] Closing Output Stream [20:35:29] Cleaning up Result.out = 561910.000000 Run complete, CPU time: 40659.794382 20:35:29 (15836): called boinc_finish </stderr_txt> <message> finish file present too long </message> ]]>  |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Kth, wanderfull, had in anticipation already started to drain the MCM buffers ... computing out the 7.26 WU's. Will be done in approximately 12 hours, then on to hyper-efficiency and more set&forget and much reduced triple eMMing.
----------------------------------------Crunch On. [Edit 1 times, last edit by Former Member at Dec 14, 2013 8:30:29 PM] |
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NixChix
Veteran Cruncher United States Joined: Apr 29, 2007 Post Count: 1187 Status: Offline Project Badges: 
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Unfortunately, this beta passed through my systems without my noticing. I was able to only restart the last one I found still processing. It is still waiting for the wingman to check in, so we'll see what happens.
----------------------------------------Cheers   |
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coolstream
Senior Cruncher SCOTLAND Joined: Nov 8, 2005 Post Count: 475 Status: Offline Project Badges:
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Greetings everyone, As Sek mentioned that with this latest version the invalids have dropped by over 99%. The last beta test had thousands of invalids where this version with 75% of the results returned has only 15 invalids. This will help reduce the number of resends required for mcm1 increasing the productivity of the grid. I will be releasing this version to production shortly. Thanks, -Uplinger I can confirm that my machines are now pulling in non-beta 7.28 WUs  Crunching in memory of my Mum PEGGY, cousin ROPPA and Aunt AUDREY. |
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