| Index | Recent Threads | Unanswered Threads | Who's Active | Guidelines | Search |
 |
World Community Grid Forums
Category: Completed Research
Forum: Say No to Schistosoma Forum
Thread: Is pdbqt size the issue here? Is there a resolution? |
| No member browsing this thread |
|
Thread Status: Active Total posts in this thread: 5
|
|
| Author |
|
|
pbenn1
Cruncher Joined: Mar 8, 2012 Post Count: 9 Status: Offline |
The only quasi positive aspect to these errors is that resources wasted is somewhat limited.
This is happening on only one of three devices all i7s W7 64bit 16GB ram 2TB dasd. This is occurring only in VINA sciences but not every WU. In "Start Here First" I found no reference to exit code 293. There was one item from several years ago, limited to older AMD devices, but those WUs were finishing, just not validating. These WUs are croaking right off the bat. Thanks, Paul GFAM_ x1YND_ hCypA_ 0089192_ 0008_ 2-- xxxxxx Error 4/2/13 17:18:57 4/3/13 06:21:22 0.00 / 0.00 0.1 / 0.0 DSFL_ 00070-19_ 0000033_ 0010_ 1-- xxxxxx Error 4/2/13 13:44:58 4/2/13 23:55:21 0.00 / 0.00 0.0 / 0.0 SN2S_ Smp019310_ 0000024_ 0753_ 3-- xxxxxx Error 4/2/13 11:17:04 4/2/13 21:23:35 0.00 / 0.00 0.1 / 0.0 Result Log Result Name: GFAM_ x1YND_ hCypA_ 0089192_ 0008_ 2-- <core_client_version>6.10.58</core_client_version> <![CDATA[ <message> - exit code 293 (0x125) </message> <stderr_txt> INFO: No state to restore. Start from the beginning. [21:43:47] Number of tasks = 24 [21:43:47] Starting task 0,CPU time is 0.000000. [21:43:47] ./ZINC02640139.pdbqt size = 35 9 ../../projects/www.worldcommunitygrid.org/gfam.x1YND_hCypA.pdbqt size = 1541 0 ERROR: Unable to resume VINA thread. </stderr_txt> ]]> Result Log Result Name: DSFL_ 00070-19_ 0000033_ 0010_ 1-- <core_client_version>6.10.58</core_client_version> <![CDATA[ <message> - exit code 293 (0x125) </message> <stderr_txt> INFO: No state to restore. Start from the beginning. [15:35:19] Number of tasks = 40 [15:35:19] Starting task 0,CPU time is 0.000000. [15:35:19] ./ZINC15068878.pdbqt size = 25 3 ../../projects/www.worldcommunitygrid.org/dsfl.target_00070-19.pdbqt size = 5536 0 ERROR: Unable to resume VINA thread. </stderr_txt> ]]> Result Log Result Name: SN2S_ Smp019310_ 0000024_ 0753_ 3-- <core_client_version>6.10.58</core_client_version> <![CDATA[ <message> - exit code 293 (0x125) </message> <stderr_txt> INFO: No state to restore. Start from the beginning. [14:21:53] Number of tasks = 40 [14:21:53] Starting task 0,CPU time is 0.000000. [14:21:53] ./ZINC00825034.pdbqt size = 29 6 ../../projects/www.worldcommunitygrid.org/sn2s.target_Smp019310.pdbqt size = 716 0 ERROR: Unable to resume VINA thread. </stderr_txt> ]]> |
||
|
|
Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello pbenn1,
I do not know why you get a code 293. I doubt that the pdqbt size has anything to do with it. I can only suggest that it might be something in the local software environment. I would personally start my investigation on the affected computer with a dramatic change. Assign it a new profile (home, work, school) that you can change without affecting other computers, then cut the number of threads in half. If that does not work, see if there is anything else to change. I assume that you are running at 100% so you are not intentionally stopping threads. If nothing works, look at what else is running, particularly security programs. Lawrence |
||
|
|
pbenn1
Cruncher Joined: Mar 8, 2012 Post Count: 9 Status: Offline |
Thanks Lawrence,
You have given me a methodology, and sparked some other ideas to follow up. I previously took an action related to your method. I un-ticked the three VINAs in question. Didn't want to continue to gen up emergency work. That device is also my personal home base, and there is at least one app I am into fairly frequently that could conceivably be hogging resources enough to put the VINA clients into an untenable position. That ZINC pdbqt reference I'm guessing refers to the resources available to the executable, whereas the one with the address to my dasd may be the data. In the error msg, the former is always dramatically smaller than the latter. Also the assumption that the device is running 100% is not the case. I've had a lot of trouble with overheating, and I think it is running about 90% presently, but it may have been even lower April 2 and 3. I'll let you know if I have any real success. Thanks again, Paul. |
||
|
|
seippel
Former World Community Grid Tech Joined: Apr 16, 2009 Post Count: 392 Status: Offline Project Badges: 
|
The pdbqt line in the output give information about two pdbqt files being docked. The first is the ligand being docked and the second is the receptor site (which is why it's larger). The two numbers after each give information about the number of atoms and branches for each. That output shouldn't be related to the problem though (you should also see it in the output of a normal vina run).
As for the 293 error, that error occurs when the thread has been suspended and is attempting to be resumed (but fails). If you are able to devote time to debugging and can recreate it reliably, I'd first make sure security software isn't interfering and then see if it runs successfully with no other applications running at the same time. Seippel |
||
|
|
pbenn1
Cruncher Joined: Mar 8, 2012 Post Count: 9 Status: Offline |
seippel,
Thank you for disabusing me of my guesswork. You have been helpful. Both you and lawrencehardin mentioned the possibility of security software interfering. I will keep those bits of info in mind. I may be doing myself in. Thanks, Paul |
||
|
|
|