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Jurisica
World Community Grid Admin, Mapping Cancer Markers and Help Conquer Cancer Scientist
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Re: HCC research update -

Hello - the work has really two parts. One is our own study of cancer genome and proteome - identifying which genes/proteins can be used for improved diagnosis and predicting treatment outcome. We mostlyl focus on lung, ovarian, but also prostate, breast and head&neck cancers. Our study frequently leads to identifying important proteins for which we do not have structure - thus we have new targets for structural studies.

The other part is related to biology at large and structural genomics studies. Here many proteins are being screened for various reasons to identify conditions that may lead to their successful crystallization and structure determination.

WCG-HCC is analyzing images from the crystallization screens for both parts. What happends in each individual case depends on the context of the discovery. For example, we may have a specific protein that may be worth a while to study as a new drug target. We also have several genes and proteins that we need to study further, to understand how mutations affect structure and function of them, and thus information on their structure is needed.

While we make progress, there are still many cancer-related proteins with unknown structure. While WCG is helping to process the backlog of 12,000 proteins our colleagues in Buffalo screen about 200+ new proteins every month. The numbers are continue to increase.

thank you,

Igor
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nasher
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Re: HCC research update -

thanks for your quick response.

I was wondering if your basic reserch concepts of the data is similar to the FAAH one

... and if you find something ...

on that forum Dr. Alex L. Perryman is trying to explain how our reserch helps them... just curious if these are similar or difrent ways to use the data.

Happy Crunching
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TimAndHedy
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Re: HCC research update -

Thankfully our processing power continues to increase.

Keep up the good work.
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Jurisica
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Re: HCC research update -

Hello - quite a discussion in the other forum.
There are similarities as well as differences between FAAH and HCC.
The main difference is - HCC is not discovering specific leads. The proteins being screened for crystallization condition, and subsequent analysis on the WCG helps to determine structure of more proteins - many of which are cancer-related, but many are related to other diseases or important biological processes. This improvement comes in two main flavors - directly finding crystallization optimization for a given protein; or by us doing data mining discovering principles of crystallization that may help efforts on any future protein. Structures get deposited to public database (PDB) and the discovered and validated principles will be published for research community at large to benefit from this large scale analysis.

Similarly as in FAAH project, we and others may will use this public information to enhance our understanding of specific biology and disease. In that process, someone may discover the function of a given protein, and link it to cancer development. A commercial entity may then design a drug that inhibits function of that proteins.
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