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sunfolk
Master Cruncher
Super Kiwi Socialistic Empire Of Jacinda
Joined: Oct 8, 2006
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DDDT- errors not seen (by me) before.

Greetings, I have received a couple of strange outputs in my linux terminal/shell output recentley that look like this:-

2008-03-10 23:44:15 [---] Starting BOINC client version 5.10.21 for i686-pc-linux-gnu
2008-03-10 23:44:15 [---] log flags: task, file_xfer, sched_ops
2008-03-10 23:44:15 [---] Libraries: libcurl/7.16.0 OpenSSL/0.9.8d zlib/1.2.3
2008-03-10 23:44:15 [---] Data directory: /home/allan/Documents/BOINC/BOINC
2008-03-10 23:44:15 [---] Processor: 1 AuthenticAMD AMD Sempron(tm) 2400+ [Family 6 Model 8 Stepping 1]
2008-03-10 23:44:15 [---] Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 mmx fxsr sse syscall mp mmxext 3dnowext 3dnow up ts
2008-03-10 23:44:15 [---] OS: Linux: 2.6.22.5-31-default
2008-03-10 23:44:15 [---] Memory: 757.64 MB physical, 760.85 MB virtual
2008-03-10 23:44:15 [---] Disk: 22.49 GB total, 14.00 GB free
2008-03-10 23:44:15 [---] Local time is UTC +12 hours
2008-03-10 23:44:15 [World Community Grid] URL: http://www.worldcommunitygrid.org/; Computer ID: xxxxxx; location: (none); project prefs: default
2008-03-10 23:44:15 [---] General prefs: from World Community Grid (last modified 2008-02-19 01:52:52)
2008-03-10 23:44:15 [---] Host location: none
2008-03-10 23:44:15 [---] General prefs: using your defaults
2008-03-10 23:44:15 [---] Preferences limit memory usage when active to 1515.27MB
2008-03-10 23:44:15 [---] Preferences limit memory usage when idle to 1515.27MB
2008-03-10 23:44:15 [---] Preferences limit disk usage to 9.31GB
2008-03-10 23:44:17 [World Community Grid] Restarting task dddt0401m0759_100099_1 using dddt version 515
2008-03-10 23:44:17 [World Community Grid] Sending scheduler request: To report completed tasks
2008-03-10 23:44:17 [World Community Grid] Reporting 1 tasks
2008-03-10 23:44:27 [World Community Grid] Scheduler RPC succeeded [server version 601]
2008-03-10 23:44:27 [World Community Grid] Deferring communication for 1 min 1 sec
2008-03-10 23:44:27 [World Community Grid] Reason: requested by project
2008-03-11 00:00:54 [---] Running CPU benchmarks
2008-03-11 00:00:54 [---] Suspending computation - running CPU benchmarks
2008-03-11 00:01:25 [---] Benchmark results:
2008-03-11 00:01:25 [---] Number of CPUs: 1
2008-03-11 00:01:25 [---] 1215 floating point MIPS (Whetstone) per CPU
2008-03-11 00:01:25 [---] 2449 integer MIPS (Dhrystone) per CPU
2008-03-11 00:01:26 [---] Resuming computation
2008-03-11 00:38:49 [World Community Grid] Sending scheduler request: To fetch work
2008-03-11 00:38:49 [World Community Grid] Requesting 17 seconds of new work
2008-03-11 00:38:54 [World Community Grid] Scheduler RPC succeeded [server version 601]
2008-03-11 00:38:54 [World Community Grid] Deferring communication for 1 min 1 sec
2008-03-11 00:38:54 [World Community Grid] Reason: requested by project
2008-03-11 00:38:56 [World Community Grid] [file_xfer] Started download of file dddt0401n0790_100320_dddt0401n

>snip>

so far so good then I get this-

2008-03-11 00:39:09 [World Community Grid] [file_xfer] Finished download of file dddt0401n0790_100320_ZINC02529026-0000.pdbqt
2008-03-11 00:39:09 [World Community Grid] [file_xfer] Throughput 1500 bytes/sec
*** glibc detected *** wcg_dddt_autodock_5.15_i686-pc-linux-gnu: double free or corruption (fasttop): 0x0d01fb80 ***
======= Backtrace: =========
/lib/libc.so.6[0xb7ec74b6]
/lib/libc.so.6(cfree+0x89)[0xb7ec9179]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZdlPv+0x21)[0x8150611]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs4_Rep10_M_destroyERKSaIcE+0x18)[0x81343a8]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs7reserveEj+0xbf)[0x81345cf]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs6appendEPKcj+0x84)[0x8134c54]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZStrsIcSt11char_traitsIcESaIcEERSt13basic_istreamIT_T0_ES7_RSbIS4_S5_T1_E+0x27d)[0x81288cd]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z22read_parameter_libraryRKSsi+0x40f)[0x80a62bf]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z13main_autodockiPPc+0x384f)[0x80c19df]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z9benchMarkv+0x5b1)[0x80e5831]
wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z6workerv+0x654)[0x80e62f4]
../../projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so(_Z6foobarPv+0x14)[0xb75a70e4]
/lib/libpthread.so.0[0xb7f99192]
/lib/libc.so.6(clone+0x5e)[0xb7f2402e]
======= Memory map: ========
08048000-08197000 r-xp 00000000 08:03 7272 /home/allan/Documents/BOINC/BOINC/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu
08197000-08199000 rwxp 0014e000 08:03 7272 /home/allan/Documents/BOINC/BOINC/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu
08199000-0d11d000 rwxp 08199000 00:00 0 [heap]
a9d00000-a9d21000 rwxp a9d00000 00:00 0
a9d21000-a9e00000 ---p a9d21000 00:00 0
a9ee8000-a9f53000 rwxp a9ee8000 00:00 0
a9fbe000-b62cd000 rwxp a9fbe000 00:00 0
b62cd000-b62ce000 ---p b62cd000 00:00 0
b62ce000-b6ace000 rwxp b62ce000 00:00 0
b6ace000-b6acf000 ---p b6ace000 00:00 0
b6acf000-b72cf000 rwxp b6acf000 00:00 0
b72cf000-b72d1000 r-xp 00000000 08:02 260354 /usr/lib/libXau.so.6.0.0
b72d1000-b72d3000 rwxp 00001000 08:02 260354 /usr/lib/libXau.so.6.0.0
b72d3000-b72e8000 r-xp 00000000 08:02 28063 /usr/lib/libICE.so.6.3.0
b72e8000-b72ea000 rwxp 00014000 08:02 28063 /usr/lib/libICE.so.6.3.0
b72ea000-b72ec000 rwxp b72ea000 00:00 0
b72ec000-b72f3000 r-xp 00000000 08:02 168348 /usr/lib/libSM.so.6.0.0
b72f3000-b72f5000 rwxp 00006000 08:02 168348 /usr/lib/libSM.so.6.0.0
b72f5000-b7342000 r-xp 00000000 08:02 61545 /usr/lib/libXt.so.6.0.0
b7342000-b7346000 rwxp 0004d000 08:02 61545 /usr/lib/libXt.so.6.0.0
b7346000-b735d000 r-xp 00000000 08:02 260519 /usr/lib/libxcb.so.1.0.0
b735d000-b735f000 rwxp 00016000 08:02 260519 /usr/lib/libxcb.so.1.0.0
b735f000-b7368000 r-xp 00000000 08:02 27137 /usr/lib/libdrm.so.2.3.0
b7368000-b736a000 rwxp 00008000 08:02 27137 /usr/lib/libdrm.so.2.3.0
b736a000-b738d000 r-xp 00000000 08:02 22196 /lib/libm-2.6.1.so
b738d000-b738f000 rwxp 00022000 08:02 22196 /lib/libm-2.6.1.so
b738f000-b7393000 r-xp 00000000 08:02 61541 /usr/lib/libXfixes.so.3.1.0
b7393000-b7395000 rwxp 00003000 08:02 61541 /usr/lib/libXfixes.so.3.1.0
b7395000-b73a2000 r-xp 00000000 08:02 61481 /usr/lib/libXext.so.6.4.0
b73a2000-b73a4000 rwxp 0000c000 08:02 61481 /usr/lib/libXext.so.6.4.0
b73a4000-b74bb000 r-xp 00000000 08:02 32118 /usr/lib/libX11.so.6.2.0
b74bb000-b74bf000 rwxp 00116000 08:02 32118 /usr/lib/libX11.so.6.2.0
b74bf000-b751d000 r-xp 00000000 08:02 61715 /usr/lib/libGL.so.1.2
b751d000-b751f000 rwxp 0005d000 08:02 61715 /usr/lib/libGL.so.1.2
b751f000-b7521000 rwxp b751f000 00:00 0
b7537000-b7541000 r-xp 00000000 08:02 27202 /lib/libgcc_s.so.1
b7541000-b7543000 rwxp 00009000 08:02 27202 /lib/libgcc_s.so.1
b7543000-b7546000 rwxp b7543000 00:00 0
b7546000-b7548000 rwxs 00000000 00:09 294912 /SYSV01037965 (deleted)
b7548000-b764c000 r-xp 00000000 08:03 45320 /home/allan/Documents/BOINC/BOINC/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so
b764c000-b7650000 rwxp 00103000 08:03 45320 /home/allan/Documents/BOINC/BOINC/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so
b7650000-b765f000 rwxp b7650000 00:00 0
b765f000-b7660000 ---p b765f000 00:00 0
b7660000-b7e61000 rwxp b7660000 00:00 0
b7e61000-b7f8e000 r-xp 00000000 08:02 22188 /lib/libc-2.6.1.so
b7f8e000-b7f8f000 r-xp 0012c000 08:02 22188 /lib/libc-2.6.1.so
b7f8f000-b7f91000 rwxp 0012d000 08:02 22188 /lib/libc-2.6.1.so
b7f91000-b7f94000 rwxp b7f91000 00:00 0
b7f94000-b7fa7000 r-xp 00000000 08:02 22214 /lib/libpthread-2.6.1.so
b7fa7000-b7fa9000 rwxp 00013000 08:02 22214 /lib/libpthread-2.6.1.so
b7fa9000-b7fab000 rwxp b7fa9000 00:00 0
b7fab000-b7fad000 r-xp 00000000 08:02 22194 /lib/libdl-2.6.1.so
b7fad000-b7faf000 rwxp 00001000 08:02 22194 /lib/libdl-2.6.1.so
b7faf000-b7fb1000 rwxp b7faf000 00:00 0
b7fb1000-b7fb2000 r-xp 00000000 08:02 260509 /usr/lib/libxcb-xlib.so.0.0.0
b7fb2000-b7fb4000 rwxp 00000000 08:02 260509 /usr/lib/libxcb-xlib.so.0.0.0
b7fb4000-b7fb6000 r-xp 00000000 08:02 54650 /usr/lib/libXdamage.so.1.1.0
b7fb6000-b7fb8000 rwxp 00001000 08:02 54650 /usr/lib/libXdamage.so.1.1.0
b7fb8000-b7fbc000 r-xp 00000000 08:02 54682 /usr/lib/libXxf86vm.so.1.0.0
b7fbc000-b7fbe000 rwxp 00003000 08:02 54682 /usr/lib/libXxf86vm.so.1.0.0
b7fbe000-b7fd3000 r-xp 00000000 08:02 61610 /usr/lib/libXmu.so.6.2.0
b7fd3000-b7fd5000 rwxp 00014000 08:02 61610 /usr/lib/libXmu.so.6.2.0
b7fd5000-b7fd7000 rwxs 00000000 00:09 294912 /SYSV01037965 (deleted)
b7fd7000-b7ff1000 r-xp 00000000 08:02 22181 /lib/ld-2.6.1.so
b7ff1000-b7ff3000 rwxp 0001a000 08:02 22181 /lib/ld-2.6.1.so
bfec0000-bfed6000 rwxp bfec0000 00:00 0 [stack]
ffffe000-fffff000 r-xp 00000000 00:00 0 [vdso]

Anyone know whats happening? This has only happened since the DDDT WU were made longer??

Allan
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[Mar 10, 2008 11:12:56 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Sekerob
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Joined: Jul 24, 2005
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Re: DDDT- errors not seen (by me) before.

Don't know, but found the error in a closed BOINC trac ticket specifically for Linux 5.10.21, so it might be your client version. Berkeley has moved up to recommend version 5.10.28: http://boinc.berkeley.edu/download_all.php

WCG always waits with updating their download page until sufficient proven stability is there. Consider that Berkeley moved already to testing 5.10.45 to appreciate why 5.10.28 has not shown here yet. I'm on 5.10.44 on one client (for windows) and it does very well.

Let us know and we delve further.
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[Mar 10, 2008 11:57:24 AM]   Link   Report threatening or abusive post: please login first  Go to top 
sunfolk
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Super Kiwi Socialistic Empire Of Jacinda
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Re: DDDT- errors not seen (by me) before.

OK - Sek
I will update the client to the berkley version 5.10.28 soon`ish and we will see how that goes. Thanks for the suggestion.

Allan
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[Mar 13, 2008 11:44:38 AM]   Link   Report threatening or abusive post: please login first  Go to top 
JmBoullier
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Normandy - France
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Re: DDDT- errors not seen (by me) before.

Allan, just in case you already had saved the 5.10.28 setup file on your disk, note that Berkeley is recommending version 5.10.45 now. smile

Cheers. Jean.
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[Mar 13, 2008 3:29:56 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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