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Martin Schnellinger
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Collection of work unit logs of all projects
Dear Friends,
for some suggestions and feedback, the text of project logs can be necessary, for example in the form of a citation.

Unfortunately, the logs of completed projects are no longer available.

So, it is a good idea to have a collection of project logs. Each project will find a place in this collection.

Below, you find the first part of the log collection, a log of an Open Pandemics COVID workunit log.

Could someone copy a log of a mapping cancer workunit, of an African climate workunit and logs of all other active projects below. In this way, we will have a workunit log of all active projets in this collection. And these logs will stay available, even if a project has long been completed.

Logs are important and explain, how projects do their work. Thank you for adding all the different logs.

----------------------------------------------------------------------------------------------
OpenPandemics - COVID-19 Result log

Result Log

Result Name: OPN1_ 0028502_ 01879_ 1--
<core_client_version>7.2.47</core_client_version>
<![CDATA[
<stderr_txt>
INFO:[22:03:08] Start AutoGrid...

autogrid4: Successful Completion.
INFO:[22:03:37] End AutoGrid...
INFO:[22:03:38] Start AutoDock for ZINC000662432100-ACR2.19_RX1--5re9_001--CYS145_wcgsplit2.dpf(Job #0)...
INFO: In AutoDock main_autodock()
Beginning AutoDock...
INFO: Setting num_generations: 27000
About to enter main loop...(dockings already completed: 0)
INFO:[22:05:06] Finished Docking number 0
INFO:[22:06:31] Finished Docking number 1
INFO:[22:07:55] Finished Docking number 2
INFO:[22:09:20] Finished Docking number 3
INFO:[22:10:46] Finished Docking number 4
INFO:[22:12:11] Finished Docking number 5
INFO:[22:13:34] Finished Docking number 6
INFO:[22:15:00] Finished Docking number 7
INFO:[22:16:25] Finished Docking number 8
INFO:[22:17:50] Finished Docking number 9
INFO:[22:19:14] Finished Docking number 10
INFO:[22:20:39] Finished Docking number 11
INFO:[22:22:05] Finished Docking number 12
INFO:[22:23:29] Finished Docking number 13
INFO:[22:24:53] Finished Docking number 14
INFO:[22:26:19] Finished Docking number 15
INFO:[22:27:43] Finished Docking number 16
INFO:[22:29:06] Finished Docking number 17
INFO:[22:30:29] Finished Docking number 18
INFO:[22:30:30] End AutoDock...
INFO:[22:30:30] Start AutoDock for ZINC000595932958-ACR2.20_RX1--5re9_001--CYS145.dpf(Job #1)...
INFO: In AutoDock main_autodock()
Beginning AutoDock...
INFO: Setting num_generations: 27000
About to enter main loop...(dockings already completed: 0)
INFO:[22:34:20] Finished Docking number 0
INFO:[22:38:02] Finished Docking number 1
INFO:[22:41:52] Finished Docking number 2
INFO:[22:45:40] Finished Docking number 3
INFO:[22:49:19] Finished Docking number 4
INFO:[22:53:06] Finished Docking number 5
INFO:[22:56:53] Finished Docking number 6
INFO:[23:00:39] Finished Docking number 7
INFO:[23:04:22] Finished Docking number 8
INFO:[23:08:06] Finished Docking number 9
INFO:[23:11:58] Finished Docking number 10
INFO:[23:15:40] Finished Docking number 11
INFO:[23:19:30] Finished Docking number 12
INFO:[23:23:13] Finished Docking number 13
INFO:[23:26:58] Finished Docking number 14
INFO:[23:30:43] Finished Docking number 15
INFO:[23:34:27] Finished Docking number 16
INFO:[23:38:11] Finished Docking number 17
INFO:[23:41:56] Finished Docking number 18
INFO:[23:45:39] Finished Docking number 19
INFO:[23:49:29] Finished Docking number 20
INFO:[23:53:20] Finished Docking number 21
INFO:[23:57:03] Finished Docking number 22
INFO:[00:00:51] Finished Docking number 23
INFO:[00:04:34] Finished Docking number 24
INFO:[00:08:24] Finished Docking number 25
INFO:[00:12:15] Finished Docking number 26
INFO:[00:16:02] Finished Docking number 27
INFO:[00:19:47] Finished Docking number 28
INFO:[00:23:37] Finished Docking number 29
INFO:[00:23:37] End AutoDock...
INFO:Cpu time = 8411.121517
00:23:38 (4256): called boinc_finish(0)

</stderr_txt>
]]>
[Dec 26, 2020 2:56:52 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: Collection of work unit logs of all projects
Result Log

Result Name: ARP1_ 0004187_ 042_ 1-- 

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
INFO: Initializing
INFO: No state to restore. Start from the beginning.
Starting WRFMain
[12:10:26] INFO: Checkpoint taken at 2018-09-23_06:00:00
[15:51:41] INFO: Checkpoint taken at 2018-09-23_12:00:00
[19:04:43] INFO: Checkpoint taken at 2018-09-23_18:00:00
[21:27:37] INFO: Checkpoint taken at 2018-09-24_00:00:00
[00:07:10] INFO: Checkpoint taken at 2018-09-24_06:00:00
[03:31:40] INFO: Checkpoint taken at 2018-09-24_12:00:00
[06:36:39] INFO: Checkpoint taken at 2018-09-24_18:00:00
[08:56:13] INFO: Checkpoint taken at 2018-09-25_00:00:00
INFO: Simulation complete compressing output.
08:58:38 (309786): called boinc_finish(0)

</stderr_txt>
]]>
[Dec 26, 2020 3:54:44 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: Collection of work unit logs of all projects
Result Log

Result Name: HST1_ 306934_ 000045_ KC0025_ T350_ F00026_ S00048_ 1--

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
INFO: result number = 1
INFO: No state to restore. Start from the beginning.
[22:46:10] INFO: Running initial simulation
Writing checkpoint at step 230.
Writing checkpoint at step 250.
Writing checkpoint at step 500.
Writing checkpoint at step 600.
Writing checkpoint at step 690.
Writing checkpoint at step 910.
Writing checkpoint at step 950.
Writing checkpoint at step 970.
Writing checkpoint at step 1320.
Writing checkpoint at step 1340.
Writing checkpoint at step 1400.
Writing checkpoint at step 1700.
Writing checkpoint at step 1810.
Writing checkpoint at step 1910.
Writing checkpoint at step 1970.
[22:39:12] INFO: Completed step 2000 of initial simulation
Writing checkpoint at step 2050.
Writing checkpoint at step 2280.
Writing checkpoint at step 2430.
Writing checkpoint at step 2600.
Writing checkpoint at step 2620.
Writing checkpoint at step 2680.
Writing checkpoint at step 2780.
Writing checkpoint at step 2940.
Writing checkpoint at step 2960.
Writing checkpoint at step 3010.
Writing checkpoint at step 3060.
Writing checkpoint at step 3080.
Writing checkpoint at step 3280.
Writing checkpoint at step 3300.
Writing checkpoint at step 3340.
Writing checkpoint at step 3360.
Writing checkpoint at step 3390.
Writing checkpoint at step 3570.
Writing checkpoint at step 3600.
Writing checkpoint at step 3620.
Writing checkpoint at step 3790.
Writing checkpoint at step 3840.
Writing checkpoint at step 3860.
Writing checkpoint at step 3900.
Writing checkpoint at step 3910.
Writing checkpoint at step 3970.
Writing checkpoint at step 3990.
[02:15:09] INFO: Completed step 4000 of initial simulation
Writing checkpoint at step 4030.
Writing checkpoint at step 4040.
Writing checkpoint at step 4230.
Writing checkpoint at step 4420.
Writing checkpoint at step 4490.
Writing checkpoint at step 4800.
Writing checkpoint at step 4820.
Writing checkpoint at step 5030.
Writing checkpoint at step 5050.
Writing checkpoint at step 5080.
Writing checkpoint at step 5260.
Writing checkpoint at step 5450.
Writing checkpoint at step 5470.
Writing checkpoint at step 5500.
Writing checkpoint at step 5520.
[15:59:12] INFO: Completed step 6000 of initial simulation
Writing checkpoint at step 6630.
Writing checkpoint at step 6640.
Writing checkpoint at step 6820.
Writing checkpoint at step 6870.
Writing checkpoint at step 6890.
[23:25:32] INFO: Completed step 8000 of initial simulation
Writing checkpoint at step 9720.
[23:49:52] INFO: Completed step 10000 of initial simulation
[00:15:11] INFO: Completed step 12000 of initial simulation
Writing checkpoint at step 12500.
[00:40:01] INFO: Completed step 14000 of initial simulation
Writing checkpoint at step 15300.
[01:05:00] INFO: Completed step 16000 of initial simulation
[01:29:43] INFO: Completed step 18000 of initial simulation
Writing checkpoint at step 18130.
[01:54:38] INFO: Completed step 20000 of initial simulation
Writing checkpoint at step 20940.
[02:19:18] INFO: Completed step 22000 of initial simulation
Writing checkpoint at step 23780.
[02:44:08] INFO: Completed step 24000 of initial simulation
[03:08:48] INFO: Completed step 26000 of initial simulation
Writing checkpoint at step 26610.
[03:33:59] INFO: Completed step 28000 of initial simulation
Writing checkpoint at step 29390.
[03:59:10] INFO: Completed step 30000 of initial simulation
[04:24:25] INFO: Completed step 32000 of initial simulation
Writing checkpoint at step 32150.
[04:49:31] INFO: Completed step 34000 of initial simulation
Writing checkpoint at step 34930.
[05:14:58] INFO: Completed step 36000 of initial simulation
Writing checkpoint at step 37680.
[05:40:25] INFO: Completed step 38000 of initial simulation
[06:05:54] INFO: Completed step 40000 of initial simulation
Writing checkpoint at step 40460.
[06:29:25] INFO: Completed step 42000 of initial simulation
Writing checkpoint at step 43460.
[06:52:35] INFO: Completed step 44000 of initial simulation
[07:15:44] INFO: Completed step 46000 of initial simulation
Writing checkpoint at step 46490.
[07:38:53] INFO: Completed step 48000 of initial simulation
Writing checkpoint at step 49500.
[08:02:12] INFO: Completed step 50000 of initial simulation
[08:25:16] INFO: Completed step 52000 of initial simulation
Writing checkpoint at step 52530.
[08:48:16] INFO: Completed step 54000 of initial simulation
Writing checkpoint at step 55570.
[09:11:12] INFO: Completed step 56000 of initial simulation
[09:34:57] INFO: Completed step 58000 of initial simulation
Writing checkpoint at step 58500.
[10:00:13] INFO: Completed step 60000 of initial simulation
Writing checkpoint at step 61270.
[10:25:41] INFO: Completed step 62000 of initial simulation
[10:50:42] INFO: Completed step 64000 of initial simulation
Writing checkpoint at step 64050.
[11:15:19] INFO: Completed step 66000 of initial simulation
Writing checkpoint at step 66900.
[11:40:02] INFO: Completed step 68000 of initial simulation
Writing checkpoint at step 69730.
[12:04:50] INFO: Completed step 70000 of initial simulation
[12:29:31] INFO: Completed step 72000 of initial simulation
Writing checkpoint at step 72550.
[12:54:10] INFO: Completed step 74000 of initial simulation
Writing checkpoint at step 75390.
[13:18:52] INFO: Completed step 76000 of initial simulation
[13:43:43] INFO: Completed step 78000 of initial simulation
Writing checkpoint at step 78210.
[14:08:31] INFO: Completed step 80000 of initial simulation
Writing checkpoint at step 81030.
[14:33:21] INFO: Completed step 82000 of initial simulation
Writing checkpoint at step 83850.
[14:58:09] INFO: Completed step 84000 of initial simulation
[15:23:17] INFO: Completed step 86000 of initial simulation
Writing checkpoint at step 86640.
[15:48:20] INFO: Completed step 88000 of initial simulation
Writing checkpoint at step 89450.
[16:13:19] INFO: Completed step 90000 of initial simulation
[16:38:03] INFO: Completed step 92000 of initial simulation
Writing checkpoint at step 92270.
[17:02:49] INFO: Completed step 94000 of initial simulation
Writing checkpoint at step 95090.
[17:27:43] INFO: Completed step 96000 of initial simulation
Writing checkpoint at step 97890.
[17:52:46] INFO: Completed step 98000 of initial simulation
[18:17:38] INFO: Completed step 100000 of initial simulation
[18:17:40] INFO: Finished initial simulation.
[18:17:40] INFO: Running secondary simulation
[18:29:58] INFO: Run complete, CPU time: 73193.141881
18:29:58 (287250): called boinc_finish(0)

</stderr_txt>
]]>
[Dec 26, 2020 3:56:13 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: Collection of work unit logs of all projects
Result Log

Result Name: MCM1_ 0169947_ 4449_ 0--

<core_client_version>7.4.41</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.53_arm-android-linux-gnu -SettingsFile MCM1_0169947_4449.txt -DatabaseFile dataset-sarc1.txt
Settings File
DateOfDesign = 20200218
Designer = Krembil/cubes
WorkOrderID = 0169947_4449
DatasetID = sarc1
RSeed = 96194450
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
RunPermutationAlgorithm = 0
FitnessFn = 0
NumberOfGenesInStartingSignature = 20
NumberOfGenesInSignatureMin = 20
NumberOfGenesInSignatureMax = 20
SearchAlgorithmNumberToCreate = 34506
PositiveClasses = 5 6
MinFitness = 0.785
VMethod = LOO 
SvmArgs = "-v 0 -t 0 -c 1"
SvmLearnLimit = 250000



[14:46:55] Initializing
[14:47:42] Running
[14:47:44] EvaluateFitnessOfStartingGeneSignatures 34506
Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.53_arm-android-linux-gnu -SettingsFile MCM1_0169947_4449.txt -DatabaseFile dataset-sarc1.txt
[07:04:29] Initializing
Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.53_arm-android-linux-gnu -SettingsFile MCM1_0169947_4449.txt -DatabaseFile dataset-sarc1.txt
[07:04:49] Initializing
[07:05:46] Running
[07:05:48] EvaluateFitnessOfStartingGeneSignatures 34506
[10:09:29] Writing final output
[10:09:29] Closing Output Stream
[10:09:29] Cleaning up
Result.out = 24435.000000
Run complete, CPU time: 65391.730000
called boinc_finish(0)

</stderr_txt>
]]>

=======================================================================


Result Log

Result Name: MCM1_ 0170009_ 9567_ 1--

<core_client_version>7.4.41</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.53_arm-android-linux-gnu -SettingsFile MCM1_0170009_9567.txt -DatabaseFile dataset-sarc1.txt
Settings File
DateOfDesign = 20200218
Designer = Krembil/cubes
WorkOrderID = 0170009_9567
DatasetID = sarc1
RSeed = 96819568
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
RunPermutationAlgorithm = 0
FitnessFn = 0
NumberOfGenesInStartingSignature = 20
NumberOfGenesInSignatureMin = 20
NumberOfGenesInSignatureMax = 20
SearchAlgorithmNumberToCreate = 12071
MinFitness = 0.497
VMethod = NFCV 
NFolds = 20
SvmArgs = "-v 0 -t 0 -c 1000"
SvmLearnLimit = 250000



[11:29:11] Initializing
[11:29:56] Running
[11:29:57] EvaluateFitnessOfStartingGeneSignatures 12071
Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.53_arm-android-linux-gnu -SettingsFile MCM1_0170009_9567.txt -DatabaseFile dataset-sarc1.txt
[14:16:00] Initializing
[14:17:04] Running
[14:17:05] EvaluateFitnessOfStartingGeneSignatures 12071
[04:00:33] Writing final output
[04:00:33] Closing Output Stream
[04:00:33] Cleaning up
Result.out = 17000.000000
Run complete, CPU time: 53292.250000
called boinc_finish(0)

</stderr_txt>
]]>

----------------------------------------
[Edit 1 times, last edit by adriverhoef at Dec 26, 2020 4:00:41 PM]
[Dec 26, 2020 3:57:22 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
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Re: Collection of work unit logs of all projects
Result Log

Result Name: MIP1_ 00327391_ 3655_ 0--

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
[2020-12-24 22: 1:33:] :: BOINC:: Initializing ... ok.
[2020-12-24 22: 1:33:] :: BOINC :: boinc_init()
INFO: result number = 0
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
command: ../../projects/www.worldcommunitygrid.org/wcgrid_mip1_rosetta_7.16_x86_64-pc-linux-gnu -in::file::zip MIP1_databasev2.zip @./MIP1_00327391.flags -out::file::silent result_silent.out -run:jran 189269195 -nstruct 2 -out::level 100 -run::no_scorefile true
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/www.worldcommunitygrid.org/mip1.MIP1_databasev2.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
set_shared_memory_fully_initialized ...
abrelax ...
abrelax.run
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Sequence Length = 261
Starting work on structure: _0001
Finished _0001 in 2374.63 seconds.
Starting work on structure: _0002
Finished _0002 in 2579.24 seconds.
======================================================
DONE :: 2 structures in 4959.96 cpu seconds
======================================================
BOINC :: BOINC support services shutting down cleanly ...
23:27:29 (610004): called boinc_finish(0)

</stderr_txt>
]]>
[Dec 26, 2020 4:03:00 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Martin Schnellinger
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Re: Collection of work unit logs of all projects
Hello friends,
thank you very much for your help
Let's see whether we covered all projects:
We got:

MIP1_ 00327391_ 3655_ 0- = Microbiome Immunity Project
MCM1_ 0169947_ 4449_ 0 = Mapping Cancer Markers
HST1_ 306934_ 000045_ KC0025_ T350_ F00026_ S00048_ 1-- = Help Stop TB Tuberculosis
ARP1_ 0004187_ 042_ 1-- = African Rainfall Project
OPN1_ 0028502_ 01879_ 1-- = Open Pandemics COVID 19

That is five of six projects. Smash Childhood Cancer is missing, but it is paused. Last Smash Childhood result was returned on 12/10/2020 So nobody has got a result log available right now. It would be good, if we could add a smash childhood cancer result log later.

Thank you. Merry Christmas and successful crunching.
MS
[Dec 27, 2020 5:26:05 AM]   Link   Report threatening or abusive post: please login first  Go to top 
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