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World Community Grid Forums
Category: Active Research
Forum: OpenPandemics - COVID-19 Project
Thread: (please, forward to Scripps' researchers): two less known DC-projects working on Sars-Cov2 |
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Thread Status: Active Total posts in this thread: 36
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Falconet
Master Cruncher Portugal Joined: Mar 9, 2009 Post Count: 3315 Status: Offline Project Badges: 
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The scientist behind Quarantine@home said on Twitter that there is no Windows version for GPU. He says this is because Scripps dropped it from the AutoDock repository (it does mention something of the sort on the Github repo).
----------------------------------------He only tested with Nvidia, btw. I absolutely love the graphics and the fact we get to know the energy result, ZINC compound being docked and the target protein.  - AMD Ryzen 5 1600AF 6C/12T 3.2 GHz - 85W - AMD Ryzen 5 2500U 4C/8T 2.0 GHz - 28W - AMD Ryzen 7 7730U 8C/16T 3.0 GHz |
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Jim1348
Veteran Cruncher USA Joined: Jul 13, 2009 Post Count: 1066 Status: Offline Project Badges: 
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It is very nice for Autodock 4, but I think the OPN folks have moved on to covalent bonds and more sophisticated stuff.
I would like them to put that on GPUs. |
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Jim1348
Veteran Cruncher USA Joined: Jul 13, 2009 Post Count: 1066 Status: Offline Project Badges:
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The scientist behind Quarantine@home said on Twitter that there is no Windows version for GPU. There is now, and I have installed it (Win7 64-bit). But it does not work on my RX 570. Maybe someone with an Nvidia card can give it a try. |
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Aurum
Master Cruncher The Great Basin Joined: Dec 24, 2017 Post Count: 2391 Status: Offline Project Badges: 
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If Moderna gave Scripps the B cells that produce the antibodies to their mRNA-1273 vaccine they could sequence the IgG and let us dock it to find exactly where it binds to Spike. In particular the eight participants with positive PRNT results.
----------------------------------------https://investors.modernatx.com/news-releases...e-1-data-its-mrna-vaccine   ...KRI please cancel all shadow-banning[Edit 1 times, last edit by Aurum420 at May 20, 2020 10:24:49 PM] |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
where is the windows version?
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Jim1348
Veteran Cruncher USA Joined: Jul 13, 2009 Post Count: 1066 Status: Offline Project Badges:
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where is the windows version? The Windows version is working well - Download Installer https://quarantine.infino.me/ Or here is the download link: https://cjmielke.github.io/quarantine-files/releases/quarantineInstall.exe |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Apologies Jim, I have the windows cpu version on a few devices, I thought you meant there was a windows GPU version.
I have tried to run Ubuntu inside my Win 10 machine with nvidia gpu but really don't get very far. Also made a usb with it on but fail with that also. It seems very complicated imo. |
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Jim1348
Veteran Cruncher USA Joined: Jul 13, 2009 Post Count: 1066 Status: Offline Project Badges:
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No, my mistake. I thought that it included the GPU too. I guess it doesn't.
----------------------------------------And my Ubuntu GPU version is just stopping too often. I think I will wait for the boinc2docker version, which they say they are working on, or at least thinking about (though it appears that even that doesn't include GPUs yet). It is still in rather basic form. [Edit 2 times, last edit by Jim1348 at May 22, 2020 12:12:21 PM] |
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Speedy51
Veteran Cruncher New Zealand Joined: Nov 4, 2005 Post Count: 1326 Status: Offline Project Badges: 
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Sorry people nothing to see here I answered my own question
---------------------------------------- [Edit 1 times, last edit by Speedy51 at May 23, 2020 8:10:36 AM] |
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Falconet
Master Cruncher Portugal Joined: Mar 9, 2009 Post Count: 3315 Status: Offline Project Badges:
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TN-Grid is sharing with others:
----------------------------------------"The first batch of genes related to COVID-19 has been completed. We sent the results, for further analysis, to the Univ. of Modena & Reggio Emilia School of Medicine, Italy. Starting from today we added another batch of genes, per request of the aforementioned institution. Most of them are antibodies, so the focus right now is the immune system. Here is the list of the genes: PTPRC CD28 CCR7 PDCD1 SNCA SPATA2 CD27 B3GAT1 IL7 IL2RA ISG20 FAS PTPN13 CD38 CD74 CD24 CR2" http://gene.disi.unitn.it/test/forum_thread.php?id=265&postid=1850 - AMD Ryzen 5 1600AF 6C/12T 3.2 GHz - 85W - AMD Ryzen 5 2500U 4C/8T 2.0 GHz - 28W - AMD Ryzen 7 7730U 8C/16T 3.0 GHz [Edit 1 times, last edit by Falconet at May 26, 2020 9:57:18 AM] |
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