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Category: Completed Research Forum: Microbiome Immunity Project Thread: MIP - WU Failing 'Permission Denied' |
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Thread Status: Active Total posts in this thread: 5
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Brothern
Cruncher Joined: Apr 17, 2010 Post Count: 6 Status: Offline Project Badges: |
I think this may be a straight-forward problem and solution, but is there someone who could unpack this into simpler language and workaround for me? Unfortunately the forum search function is rather difficult to use.
----------------------------------------Error Unpacking zip data: ../../projects/www.worldcommunitygrid.org/mip1.MIP1_databasev2.zip error: cannot create ./database/chemical/element_sets/default/element_properties.txt Permission denied I've power cycled the computer, uninstalled/reinstalled BOINC, reset project, unzipped the .zip file myself into that location, etc. Whole text <core_client_version>7.14.2</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> [2019- 7- 1 12:47:11:] :: BOINC:: Initializing ... ok. [2019- 7- 1 12:47:11:] :: BOINC :: boinc_init() INFO: result number = 0 BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/www.worldcommunitygrid.org/wcgrid_mip1_rosetta_7.16_windows_intelx86 -in::file::zip MIP1_databasev2.zip @./MIP1_00203452.flags -out::file::silent result_silent.out -run:jran 634906491 -nstruct 15 -out::level 100 -run::no_scorefile true Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/www.worldcommunitygrid.org/mip1.MIP1_databasev2.zip [2019- 7- 1 21:46: 3:] :: BOINC:: Initializing ... ok. [2019- 7- 1 21:46: 3:] :: BOINC :: boinc_init() INFO: result number = 0 BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/www.worldcommunitygrid.org/wcgrid_mip1_rosetta_7.16_windows_intelx86 -in::file::zip MIP1_databasev2.zip @./MIP1_00203452.flags -out::file::silent result_silent.out -run:jran 634906491 -nstruct 15 -out::level 100 -run::no_scorefile true Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/www.worldcommunitygrid.org/mip1.MIP1_databasev2.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... set_shared_memory_fully_initialized ... abrelax ... abrelax.run Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. [2019- 7- 1 21:50:40:] :: BOINC:: Initializing ... ok. [2019- 7- 1 21:50:40:] :: BOINC :: boinc_init() INFO: result number = 0 BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/www.worldcommunitygrid.org/wcgrid_mip1_rosetta_7.16_windows_intelx86 -in::file::zip MIP1_databasev2.zip @./MIP1_00203452.flags -out::file::silent result_silent.out -run:jran 634906491 -nstruct 15 -out::level 100 -run::no_scorefile true Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/www.worldcommunitygrid.org/mip1.MIP1_databasev2.zip error: cannot create ./database/chemical/element_sets/default/element_properties.txt Permission denied Setting database description ... Setting up checkpointing ... Setting up graphics native ... set_shared_memory_fully_initialized ... abrelax ... abrelax.run Setting up folding (abrelax) ... ERROR: Unable to open element file: .\database\chemical/element_sets/default/element_properties.txt ERROR:: Exit from: ..\..\..\src\core\chemical\ElementSet.cc line: 48 BOINC:: Error reading and gzipping output datafile: default.out 21:51:43 (10336): called boinc_finish(1) [Edit 1 times, last edit by Brothern at Jul 2, 2019 3:15:56 AM] |
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Sgt.Joe
Ace Cruncher USA Joined: Jul 4, 2006 Post Count: 7576 Status: Offline Project Badges: |
Have you tried running any other WCG projects ? If so, did they work OK ? Just trying to determine if this is MIP1 specific or if your hardware is the problem.
----------------------------------------Cheers
Sgt. Joe
*Minnesota Crunchers* |
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Brothern
Cruncher Joined: Apr 17, 2010 Post Count: 6 Status: Offline Project Badges: |
I have only tried MIP so far. I will attempt a few other projects. Cheers.
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Brothern
Cruncher Joined: Apr 17, 2010 Post Count: 6 Status: Offline Project Badges: |
Also, I would note that a minority of MIP WUs do complete successfully.
----------------------------------------Ex, Setting WU description ... Unpacking zip data: ../../projects/www.worldcommunitygrid.org/mip1.MIP1_databasev2.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... set_shared_memory_fully_initialized ... abrelax ... abrelax.run Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. [Edit 1 times, last edit by Brothern at Jul 2, 2019 6:53:04 PM] |
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Brothern
Cruncher Joined: Apr 17, 2010 Post Count: 6 Status: Offline Project Badges: |
I have had no issues processing other projects.
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