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World Community Grid Forums
Category: Completed Research
Forum: Human Proteome Folding - Phase 2
Thread: HPF2 Update - January 2011 |
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Thread Status: Active Total posts in this thread: 20
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
col323,
Thought we were still on the Microbiome experiment, then lacking an update combined with the present forced slowing of HPF2 due shortage of tasks, thought that segment was now nearing the end. Don't crunch HPF2 here, so what are typical batches these days and do they correlate to past experiments, extended or not finished? cheers --//-- |
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gb009761
Master Cruncher Scotland Joined: Apr 6, 2005 Post Count: 2982 Status: Offline Project Badges: 
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SekeRob, as explained in the link right at the top of this particular thread, the batches 'oa' to 'ok' have been defined, but nothing since. Now. we're on batch 'os'...
----------------------------------------Quote from the above link As of late January, we have completed pre-analysis on the last of the data that we will be working on from the HMP (for now), and have dropped it off to be picked up by the grid (see codes 'oh' - 'ok' in the following table). We are now looking into new organisms - such as the malaria parasite Plasmodium Yoelii Yoelii (a model rodent malaria important for understanding the function of human malaria) - to analyze and send to the grid. So, I'm assuming we've been processing these new organisms - and have been for some time...  |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Yes, I read that, the question was; what batches were being computed at present? Thanks for filling in that gap for me and others.
------------------------------------------//-- Edit: You posted your reply whilst I was searching for info holes... did not see your previous reply ;>) [Edit 1 times, last edit by Former Member at Aug 9, 2011 4:39:11 PM] |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hi Everyone,
I just took a look through this thread, and it looks like you guys are hankering for an update (which makes sense - apologies for the gap in time!). I'm going to write a full status update in the next week (I'll put it up here), but in the meantime, here's what we're doing in brief: The human microbiome project processing was finished with batch 'ok', and from there we moved on to some malaria data - Plasmodium Yoelii Yoelii, a model rodent malaria, made up batches 'ol' through 'op' (there's a bit more info on PYY in the january update, near the end). After malaria, while we work out our post-processing analyses, we moved on to Archaea, which make up the third domain of life (the other two being bacteria and eukaryotes). I'll write more about this in the status update. Batches 'oq' through 'ow' are composed of proteins from archaea Haloferax and Haloarcula. We'll be moving on shortly from the Archaea (which are pretty cool and important), to improving our analyses of Mouse and Human data to do advanced human protein function prediction based on the structures returned from the WCG. So, that's a mouthful, but it'll be more of a mouthful in the status update.. Thanks for grinding! - Duncan |
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gb009761
Master Cruncher Scotland Joined: Apr 6, 2005 Post Count: 2982 Status: Offline Project Badges:
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Thanks Duncan for the update - it's much appreciated
---------------------------------------- Here's to reading your more indepth update when you've had a chance to finalise it  |
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nasher
Veteran Cruncher USA Joined: Dec 2, 2005 Post Count: 1423 Status: Offline Project Badges: 
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thanks for the update it appears my computers are crunching a few of these right now as my prime projects are in slowdown or such. its a great project and the more updates there are from the scientists the more likely I am intrested in working on the project
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Warped@RSA
Senior Cruncher South Africa Joined: Jan 15, 2006 Post Count: 422 Status: Offline Project Badges:
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.... I'm going to write a full status update in the next week (I'll put it up here), but in the meantime, .... Batches 'oq' through 'ow' are composed of proteins from archaea Haloferax and Haloarcula. - Duncan Hello Duncan You posted this on 10 August. Did I miss the detailed update somewhere? I am crunching ow 7xx batches, which I would expect means we have nearly completed these Archaea compounds. Am I correct?
Dave
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello Warped@RSA,
The HPF2 (Bonneau Lab) website is currently down with a 404 Error. I don't know when that happened, but you can keep checking using the URLs at https://secure.worldcommunitygrid.org/research/hpf2/overview.do Lawrence |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello Warped@RSA, The HPF2 (Bonneau Lab) website is currently down with a 404 Error. I don't know when that happened, but you can keep checking using the URLs at https://secure.worldcommunitygrid.org/research/hpf2/overview.do Lawrence Try this for the time being: https://files.nyu.edu/rb133/public/ |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Would have expected for this to make it into the WCG Research accomplishments list https://files.nyu.edu/rb133/public/structure.html going to
http://genome.cshlp.org/content/early/2011/08/05/gr.121475.111.abstract unless that's hidden behind the Jan.31,2011 item. Accepted July 28.2011. --//-- |
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