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FightAIDS@Home – Phase 2 Update

The FightAIDS@Home Scientist have provided an update on the FightAIDS@Home – Phase 2 project, which was included in the June, 2009 Newsletter. You may review the newsletter online here, or for your convenience the update is as follows:

FightAIDS@Home – Phase 2, Olson Laboratory, The Scripps Research Institute, La Jolla, California, USA
The FightAIDS@Home Project uses the volunteered computer power of World Community Grid to test candidate drug compounds against the variations of HIV that can arise because of drug resistance. FightAIDS@Home has identified new HIV protease active site inhibitors that have been shown to work in the test tube and are now being further developed by our chemist collaborators; in addition, several compounds were recently discovered to be potential candidates for a novel binding site on one of the most multi-drug-resistant mutant "super bugs."

Full Report: http://fightaidsathome.scripps.edu/images/FAAH_vol7.pdf
[Jun 18, 2009 7:41:24 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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Re: FightAIDS@Home – Phase 2 Update

Phase 2? methinks this is a typo? confused
[Jun 18, 2009 8:41:17 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Sekerob
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Re: FightAIDS@Home – Phase 2 Update

It is and it isn't. There was the major AutoDock upgrade, but at the time it was decided to keep it in 1 pot. There was full depletion then before launching the new version. Still got the years somewhere... think mikefinn Larry Fine was the one tracking the progress. ~44k years or so.

Ah yes: https://secure.worldcommunitygrid.org/forums/wcg/viewthread?thread=7042 Here somewhere the change over was made to report in experiments rather than phases.

edit: Look for posts discussing 43% ;>)
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[Jun 18, 2009 9:26:47 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Sekerob
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applause Re: FightAIDS@Home – Phase 2 Update

FightAIDS@Home also made it to the International Science Grid This Week including mention of an upcoming paper.

http://www.isgtw.org/?pid=1000602

New results from the Fight AIDS@Home project were recently published in the ACS Journal of Chemical Information and Modeling.

The new results allow faster and more reliable classification of molecules potentially able to bind to the HIV virus, and should speed the goal of finding new HIV therapeutics effective in the face of drug resistance.

Arthur Olson of the Scripps Research Institute is the lead researcher with the project and says the results will improve the effectiveness of future computations.

“This will allow us to screen much larger chemical libraries more efficiently, and enable us to use more sophisticated models of the mutant structures, that incorporate flexibility into their representation,” he said.

So far, as part of FightAIDS@Home, volunteer computers have screened a broad range of hundreds of thousands of ligands for their ability to block HIV protease.

Olson said these volunteers are acknowledged in the new paper.

“These results would not have been possible without the computing resources of World Community Grid and the generous support of the FightAIDS@Home volunteers. We are most grateful to all of you.”

A biomedical distributed computing project, FightAIDS@Home is run as part of World Community Grid and uses computational methods to identify new candidate drugs to block HIV protease, a key molecular structure that when blocked can prevent the virus from maturing and thus avoid the onset of AIDS.

World Community Grid was launched by IBM in 2004. Projects submitted to World Community Grid must come from a non-profit organization, be adaptable to a grid environment, and directly benefit humanity; results from WCG projects must be made available to the public.

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[Jul 16, 2009 7:37:03 AM]   Link   Report threatening or abusive post: please login first  Go to top 
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