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Viktors
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Update of the AutoDock research code for FightAIDS@home project

We are happy to announce that we are upgrading the AutoDock research code used for the FightAIDS@Home project. The new code uses more efficient algorithms which run faster, produce more accurate, can model flexibility in target molecules, and thus can be used for protein - protein interactions. These improvements will allow us to use this code in other upcoming research projects, one to be launched very soon. Details about the AutoDock improvements can be found here: http://autodock.scripps.edu/wiki/NewFeatures

The testing of the new AutoDock code is nearly complete. Meanwhile we will be finishing up certain batches of work units using the old code and then switch to the new code. The data formats used for the new code are slightly different so we need to run the old work units to completion before starting the new work units. Thus, there will be a short period of time during which FightAIDS@Home work units will not be sent out as we convert to the new code and new data. If your preferences are set to run only the FightAIDS@Home project, you may see that your agent is paused for some amount of time. We do not expect this to be much longer than one day, and perhaps just hours. This may happen at different times for the UD agents vs the BOINC agents and we expect it to happen some time the week of August 6 to 15, 2007. No action is required on the part of members. Forgive us for any inconvenience this might cause you and thank you for your patience and contribution.
[Aug 6, 2007 6:47:01 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Sekerob
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Re: Update of the AutoDock research code for FightAIDS@home project

Seeing the old FA@H last night being validated with quorum 2, the 3rd remaining 'In Progress', maybe few words could be spend on the way the credit awards will work for BOINC. on FA@H Update. ATM, of the 5 that had it, 3 got exact credit from claim, effectively dismissing 2 underclaimers, 1 overclaimer and 2 using the average. The samples:

faah2016_ d184n372_ x2AZC_ 00_ 2-- Valid 08/01/2007 22:07:56 08/02/2007 18:43:40 4.96 56.3 / 72.6
faah2016_ d184n372_ x2AZC_ 00_ 0-- Valid 08/01/2007 21:57:11 08/05/2007 14:17:17 7.07 72.6 / 72.6

faah2016_ d184n321_ x2AZC_ 01_ 2-- Valid 08/01/2007 21:52:01 08/04/2007 08:34:48 5.05 51.8 / 51.8
faah2016_ d184n321_ x2AZC_ 01_ 1-- Valid 08/01/2007 21:37:41 08/02/2007 02:06:53 3.15 40.4 / 51.8

faah2016_ d184n324_ x2AZC_ 01_ 2-- Valid 08/01/2007 21:52:01 08/03/2007 17:35:49 6.77 69.8 / 69.8
faah2016_ d184n324_ x2AZC_ 01_ 0-- Valid 08/01/2007 21:51:20 08/06/2007 08:19:17 12.65 93.9 / 69.8

faah2016_ d184n314_ x2AZC_ 02_ 2-- Valid 08/01/2007 21:52:01 08/04/2007 17:27:59 5.30 54.4 / 51.6
faah2016_ d184n314_ x2AZC_ 02_ 0-- Valid 08/01/2007 21:50:14 08/02/2007 09:37:51 3.07 48.8 / 51.6

faah2016_ d184n243_ x2AZC_ 00_ 2-- Valid 08/01/2007 21:50:00 08/02/2007 08:20:27 3.74 58.5 / 58.3
faah2016_ d184n243_ x2AZC_ 00_ 0-- Valid 08/01/2007 21:46:54 08/03/2007 14:39:30 5.63 58.1 / 58.3

The build up claim history of devices certainly appear to have a controlling effect on the normalization.
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[Aug 8, 2007 10:44:26 AM]   Link   Report threatening or abusive post: please login first  Go to top 
knreed
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Re: Update of the AutoDock research code for FightAIDS@home project

The standard BOINC way of awarding claim when there is a quorum of 2 is to simply award the lower of the claimed credits. This doesn't account for some computers which claim low incorrectly for many reasons. As a result we are using a different policy.

If the two 'claimed' credits are similar, then the credit granted will be the average of the two values. However, if the two claimed credits are far apart, then BOINC will check the 'recent credit per cpu sec' value for each computer and compare it against the claimed credit/cpu time for the result. Which ever computer is closer to their recent average will be used to assign the granted credit for the quorum.

Kevin
[Aug 8, 2007 1:21:11 PM]   Link   Report threatening or abusive post: please login first  Go to top 
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